The complete chloroplast genome and phylogenetic analysis of Astragalus sinicus Linne 1767

被引：3

作者：

Ke, Qinglin ^{[1
]}

Shangguan, Hongbin ^{[1
]}

Liu, Wenqiang ^{[1
]}

Tang, Minqiang ^{[2
]}

Bian, Jianxin ^{[3
]}

Cui, Licao ^{[1
]}

Li, Yihan ^{[1
]}

机构：

[1] Jiangxi Agr Univ, Coll Biosci & Engn, Nanchang 330045, Jiangxi, Peoples R China

[2] Hainan Univ, Coll Forestry, Haikou, Hainan, Peoples R China

[3] Peking Univ, Inst Adv Agr Sci, Weifang, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2022年 / 7卷 / 05期

基金：

中国国家自然科学基金;

关键词：

Chloroplast genome; phylogenetic analysis; Astragalus sinicus; MILK VETCH; SEQUENCE; COMMUNITY; SOFTWARE;

D O I：

10.1080/23802359.2022.2074804

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Astragalus sinicus Linne 1767 is a traditional winter-growing green manure, that plays an important role in upgrading soil fertility and maintaining crop yield and quality for rice fields. This study reports the complete chloroplast genome of A. sinicus. The chloroplast genome contained 110 complete genes, including 76 protein-coding genes, 4 ribosomal RNA genes, and 30 tRNA genes with 123,830 bp in length and a 34.66% GC content with IR loss. The evolutionary history, referred to as the maximum-likelihood (ML), showed that A. sinicus and Astragalus bhotanensis were most closely related. The chloroplast genome analysis of A. sinicus will serve as a reference for future studies on species evolution, plant conservation, and molecular phylogeny in Astragalus.

引用

页码：851 / 853

页数：3

共 17 条

[1] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].

Bankevich, Anton ;

Nurk, Sergey ;

Antipov, Dmitry ;

Gurevich, Alexey A. ;

Dvorkin, Mikhail ;

Kulikov, Alexander S. ;

Lesin, Valery M. ;

Nikolenko, Sergey I. ;

Son Pham ;

Prjibelski, Andrey D. ;

Pyshkin, Alexey V. ;

Sirotkin, Alexander V. ;

Vyahhi, Nikolay ;

Tesler, Glenn ;

Alekseyev, Max A. ;

Pevzner, Pavel A. .

JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477

[2] BLAST: a more efficient report with usability improvements [J].

Boratyn, Grzegorz M. ;

Camacho, Christiam ;

Cooper, Peter S. ;

Coulouris, George ;

Fong, Amelia ;

Ma, Ning ;

Madden, Thomas L. ;

Matten, Wayne T. ;

McGinnis, Scott D. ;

Merezhuk, Yuri ;

Raytselis, Yan ;

Sayers, Eric W. ;

Tao, Tao ;

Ye, Jian ;

Zaretskaya, Irena .

NUCLEIC ACIDS RESEARCH, 2013, 41 (W1) :W29-W33

[3] A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data [J].

Coil, David ;

Jospin, Guillaume ;

Darling, Aaron E. .

BIOINFORMATICS, 2015, 31 (04) :587-589

[4] Characterization of the complete chloroplast genome of Astragalus galactites (Fabaceae) [J].

Ding, Xiaodong ;

Zhang, Chaopan ;

Gao, Yangqiong ;

Bei, Zhanlin ;

Yan, XingFu .

MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (11) :3278-3279

[5]

Doyle JJ., 1987, Phytochem Bull, V19, P11, DOI DOI 10.2307/2419362

[6]

Gao S.J., 2022, PLANT COMMUN, V3

[7] The complete chloroplast genome and phylogenetic analysis of Astragalus scaberrimus Bunge 1833 [J].

Guo, Yupeng ;

Yao, Buqing ;

Yuan, Mengran ;

Li, Junqiao .

MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (12) :3364-3366

[8] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability [J].

Katoh, Kazutaka ;

Standley, Daron M. .

MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) :772-780

[9] Versatile and open software for comparing large genomes [J].

Kurtz, S ;

Phillippy, A ;

Delcher, AL ;

Smoot, M ;

Shumway, M ;

Antonescu, C ;

Salzberg, SL .

GENOME BIOLOGY, 2004, 5 (02)

[10] A nodule-specific plant cysteine proteinase, AsNODF32, is involved in nodule senescence and nitrogen fixation activity of the green manure legume Astragalus sinicus [J].

Li, Yixing ;

Zhou, Lei ;

Li, Youguo ;

Chen, Dasong ;

Tan, Xuejuan ;

Lei, Lei ;

Zhou, Junchu .

NEW PHYTOLOGIST, 2008, 180 (01) :185-192

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