Distribution of satellite markers in water buffalo genome

被引：0

作者：

Sharma, Upasna ^{[1
]}

Banerjee, Priyanka ^{[1
]}

Joshi, Jyoti ^{[1
]}

Khatri, Indu ^{[1
]}

Vijh, Ramesh K. ^{[1
]}

机构：

[1] Natl Bur Anim Genet Resources, Karnal 132001, Haryana, India

来源：

INDIAN JOURNAL OF ANIMAL SCIENCES | 2012年 / 82卷 / 05期

关键词：

Big Tandem repeats; Buffalo; Microsatellites; Minisatellites; BOVINE MICROSATELLITE MARKERS; RIVER BUFFALO; DIVERSITY ANALYSIS; SET; MAP;

D O I：

暂无

中图分类号：

S8 [畜牧、动物医学、狩猎、蚕、蜂];

学科分类号：

0905 ;

摘要：

Genomic markers have wide range of applications and are of several types depending upon the size and the utility. These markers are preferred over several other markers like protein or blood groups. The genomic markers are highly polymorphic, ubiquitously distributed and easier to automate. Microsatellites are short, tandem-repeated DNA sequences which are widely distributed among genomes. Advances in sequence technologies and bioinformatics have completely changed the way the markers are identified. The buffalo whole genome sequence assembly was utilised using bioinformatics tools for extraction of genomic markers, viz. microsatellites, minisatellites and big tandem repeats. Large numbers of microsatellites (3.84 lakh) were identified on all the autosomes and sex chromosme. More than 85% of the microsatellites were dinucleotides while 14% were trinucleotides. The total number of minisatellites and big tandem repeats were 4655 and 752 respectively. The number of minisatellites and big tandem repeats are very small compared to the number of microsatellites.

引用

页码：491 / 494

页数：4

共 16 条

[1] A first generation whole genome RH map of the river buffalo with comparison to domestic cattle [J].

Amaral, M. Elisabete J. ;

Grant, Jason R. ;

Riggs, Penny K. ;

Stafuzza, Nedenia B. ;

Rodrigues Filho, Edson A. ;

Goldammer, Tom ;

Weikard, Rosemarie ;

Brunner, Ronald M. ;

Kochan, Kelli J. ;

Greco, Anthony J. ;

Jeong, Jooha ;

Cai, Zhipeng ;

Lin, Guohui ;

Prasad, Aparna ;

Kumar, Satish ;

Saradhi, G. Pardha ;

Mathew, Boby ;

Kumar, M. Aravind ;

Miziara, Melissa N. ;

Mariani, Paola ;

Caetano, Alexandre R. ;

Galvao, Stephan R. ;

Tantia, Madhu S. ;

Vijh, Ramesh K. ;

Mishra, Bina ;

Kumar, S. T. Bharani ;

Pelai, Vanderlei A. ;

Santana, Andre M. ;

Fornitano, Larissa C. ;

Jones, Brittany C. ;

Tonhati, Humberto ;

Moore, Stephen ;

Stothard, Paul ;

Womack, James E. .

BMC GENOMICS, 2008, 9 (1)

[2] A medium-density genetic linkage map of the bovine genome [J].

Barendse, W ;

Vaiman, D ;

Kemp, SJ ;

Sugimoto, Y ;

Armitage, SM ;

Williams, JL ;

Sun, HS ;

Eggen, A ;

Agaba, M ;

Aleyasin, SA ;

Band, M ;

Bishop, MD ;

Buitkamp, J ;

Byrne, K ;

Collins, F ;

Cooper, L ;

Coppettiers, W ;

Denys, B ;

Drinkwater, RD ;

Easterday, K ;

Elduque, C ;

Ennis, S ;

Erhardt, G ;

Ferretti, L ;

Flavin, N ;

Gao, Q ;

Georges, M ;

Gurung, R ;

Harlizius, B ;

Hawkins, G ;

Hetzel, J ;

Hirano, T ;

Hulme, D ;

Jorgensen, C ;

Kessler, M ;

Kirkpatrick, BW ;

Konfortov, B ;

Kostia, S ;

Kuhn, C ;

Lenstra, JA ;

Leveziel, H ;

Lewin, HA ;

Leyhe, B ;

Lil, L ;

Burriel, IM ;

McGraw, RA ;

Miller, JR ;

Moody, DE ;

Moore, SS ;

Nakane, S .

MAMMALIAN GENOME, 1997, 8 (01) :21-28

[3] Microsatellites: consensus and controversy [J].

Chambers, GK ;

MacAvoy, ES .

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY, 2000, 126 (04) :455-476

[4] Current status of the river buffalo (Bubalus bubalis L.) gene map [J].

El Nahas, SM ;

de Hondt, HA ;

Womack, JE .

JOURNAL OF HEREDITY, 2001, 92 (03) :221-225

[5] Variable Tandem Repeats Accelerate Evolution of Coding and Regulatory Sequences [J].

Gemayel, Rita ;

Vinces, Marcelo D. ;

Legendre, Matthieu ;

Verstrepen, Kevin J. .

ANNUAL REVIEW OF GENETICS, VOL 44, 2010, 44 :445-477

[6]

Hishida O, 1996, P 8 AN SCI C AAAP, P354

[7]

IANNUZZI L, 1994, CYTOGENET CELL GENET, V67, P102

[8] A comprehensive genetic map of the cattle genome based on 3802 microsatellites [J].

Ihara, N ;

Takasuga, A ;

Mizoshita, K ;

Takeda, H ;

Sugimoto, M ;

Mizoguchi, Y ;

Hirano, T ;

Itoh, T ;

Watanabe, T ;

Reed, KM ;

Snelling, WM ;

Kappes, SM ;

Beattie, CW ;

Bennett, GL ;

Sugimoto, Y .

GENOME RESEARCH, 2004, 14 (10A) :1987-1998

[9] Why the Indian Subcontinent Holds the Key to Global Tiger Recovery [J].

Mondol, Samrat ;

Karanth, K. Ullas ;

Ramakrishnan, Uma .

PLOS GENETICS, 2009, 5 (08)

[10]

MOORE SS, 1995, ANIM GENET, V26, P355, DOI 10.1111/j.1365-2052.1995.tb02674.x

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