Computational insight to design new potential hepatitis C virus NS5B polymerase inhibitors with drug-likeness and pharmacokinetic ADMET parameters predictions

被引:8
作者
Ejeh, Stephen [1 ]
Uzairu, Adamu [1 ]
Shallangwa, Gideon A. [1 ]
Abechi, Stephen E. [1 ]
机构
[1] Ahmadu Bello Univ, Dept Chem, PMB 1044, Zaria, Kaduna, Nigeria
关键词
Ligand-based design; HCV NS5B polymerase; Pharmacokinetic profiles; MOLECULAR DOCKING; 3D-QSAR;
D O I
10.1186/s43094-021-00373-6
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Background: Hepatitis C virus (HCV) is considered a worldwide health problem since it affects over 3% of the population and causes 300,000 fatalities per year. Chronic infection causes high morbidity and mortality in patients, leading to liver cirrhosis, hepatocellular carcinoma, fibrosis, liver cancer, and other HCV-related illnesses. Finding novel and better HCV treatments is a top international health goal right now. As a result, the pressing need for new HCV antiviral drugs has fueled research into the structural requirements of NS5B polymerase inhibitors at a molecular basis. Results: In this study, an in silico technique was applied to study 79 compounds with HCV inhibitory bioactivity, with the best statistical results (R-2 = 0.7051, Q(2) = 0.6455, R-pred(2) = 0.6992, R-c(r)2 = 0.6570, SEE = 0.2694). Conclusions: This QSAR investigation allowed the research team to evaluate the influence of straightforward descriptors, shedding insight into the critical elements that guide the design of innovative effective molecules. Most of the innovative effective molecules exhibited better binding affinity (-195.6 kcal/mol) than dasabuvir the reference drug (-171.0 kcal/mol) with the target receptor (hepatitis C virus NS5B RNA polymerase). ADMET prediction disclosed enhanced pharmacokinetic properties with lower MRTD (maximum tolerated dose) of some new derivatives.
引用
收藏
页数:13
相关论文
共 21 条
[1]   Investigation of some benzoquinazoline and quinazoline derivatives as novel inhibitors of HCV-NS3/4A protease: biological, molecular docking and QSAR studies [J].
Abuelizz, Hatem A. ;
Marzouk, Mohamed ;
Bakheit, Ahmed H. ;
Al-Salahi, Rashad .
RSC ADVANCES, 2020, 10 (59) :35820-35830
[2]   High-dimensional QSAR classification model for anti-hepatitis C virus activity of thiourea derivatives based on the sparse logistic regression model with a bridge penalty [J].
Algamal, Zakariya Yahya ;
Lee, Muhammad Hisyam ;
Al-Fakih, Abdo M. ;
Aziz, Madzlan .
JOURNAL OF CHEMOMETRICS, 2017, 31 (06)
[3]   New Workflow for QSAR Model Development from Small Data Sets: Small Dataset Curator and Small Dataset Modeler. Integration of Data Curation, Exhaustive Double Cross-Validation, and a Set of Optimal Model Selection Techniques [J].
Ambure, Pravin ;
Gajewicz-Skretna, Agnieszka ;
Cordeiro, M. Natalia D. S. ;
Roy, Kunal .
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2019, 59 (10) :4070-4076
[4]   Quantitative structure-activity relationship (QSAR) and design of novel ligands that demonstrate high potency and target selectivity as protein tyrosine phosphatase 1B (PTP 1B) inhibitors as an effective strategy used to model anti-diabetic agents [J].
Arthur, David Ebuka ;
Ejeh, Stephen ;
Uzairu, Adamu .
JOURNAL OF RECEPTORS AND SIGNAL TRANSDUCTION, 2020, 40 (06) :501-520
[5]   Molecular interactions between mitochondrial membrane proteins and the C-terminal domain of PB1-F2: an in silico approach [J].
Danishuddin, Mohd ;
Khan, Shahper N. ;
Khan, Asad U. .
JOURNAL OF MOLECULAR MODELING, 2010, 16 (03) :535-541
[6]  
Ejeh S., 2021, B NATL RES CENT, DOI [10.1186/s42269-020-00467-w, DOI 10.1186/S42269-020-00467-W]
[7]   In Silico Design, Drug-Likeness and ADMET Properties Estimation of Some Substituted Thienopyrimidines as HCV NS3/4A Protease Inhibitors [J].
Ejeh, Stephen ;
Uzairu, Adamu ;
Shallangwa, Gideon A. ;
Abechi, Stephen E. .
CHEMISTRY AFRICA-A JOURNAL OF THE TUNISIAN CHEMICAL SOCIETY, 2021, 4 (03) :563-574
[8]  
Ibrahim A., 2020, J CHEM LETT, V1, P69
[9]   3D-QSAR and molecular docking studies on designing inhibitors of the hepatitis C virus NS5B polymerase [J].
Li, Wenlian ;
Si, Hongzong ;
Li, Yang ;
Ge, Cuizhu ;
Song, Fucheng ;
Ma, Xiuting ;
Duan, Yunbo ;
Zhai, Honglin .
JOURNAL OF MOLECULAR STRUCTURE, 2016, 1117 :227-239
[10]  
Mannhold Raimund., 2008, Molecular Modeling: Basic Principles and Applications