Use of the DiversiLab® semiautomated repetitive-sequence-based polymerase chain reaction for epidemiologic analysis on Acinetobacter baumannii isolates in different Italian hospitals

被引:0
作者
Carretto, Edoardo [1 ]
Barbarini, Daniela [1 ]
Farina, Claudio [2 ]
Grosini, Alessia [1 ]
Nicoletti, Pierluigi [3 ]
Manso, Esther [4 ]
机构
[1] Univ Pavia, Policlin San Matteo, Fdn IRCCS, Area Infettivol,Lab Sperimentali Ric, I-27100 Pavia, Italy
[2] Osped San Carlo Borromeo Milano, Azienda Osped, UO Microbiol, Milan, Italy
[3] Azienda Osped Careggi, UO Microbiol, Florence, Italy
[4] Osped Riuniti Umberto I Lancisi Salesi, Azienda Osped Univ, Lab Anal & Microbiol, Ancona, Italy
关键词
Acinelobacter baumannii; automated ribotyping; RiboPrinter((R)); automated repetitive-sequence-based PCR; DiversiLab microbial typing system((R)); molecular epidemiology; microbiology; susceptibility testing; Italy;
D O I
10.1016/j.diagmicrobio.2007.07.002
中图分类号
R51 [传染病];
学科分类号
100401 ;
摘要
Acinetobacter baumannii is typically a nosocomial pathogen. Epidemiologic tools that can rapidly trace the spread of hospital-associated infections due to this microorganism are essential. Currently, amplified fragment length polymorphism and pulsed-field gel electrophoresis using ApaI, a macrorestriction enzyme, are the molecular techniques most widely used to type this microorganism. Unfortunately, they are technically demanding, requiring also well-trained personnel, and are time consuming. The aims of this study are 1) to evaluate the usefulness of the semiautomated repetitive-sequence-based polymerase chain reaction (rep-PCR) for typing A. baumannii, comparing this method with another sermautomated technique, such as ribotyping, and 2) to acquire information about the incidence, the clinical significance, and the susceptibility patterns of this microorganism in 13 different Italian hospitals in a 4-week period (total study population, > 14000 beds). Twenty-eight A. baumannii were isolated in 7 different hospitals; 21 strains were analyzed with molecular methods. Automated ribotyping distinguished 6 different clusters of isolates, whereas rep-PCR appeared to be more discriminating, allowing us to distinguish 8 different clusters. Our study confirms the good discriminatory power of the semiautomated rep-PCR. Although expensive, this method is simple, fast, and reproducible, and in our opinion, it could be used in a hierarchic approach as a 1st-line typing tool if results of analysis are required in a short period or if a large number of isolates have to be analyzed. (c) 2008 Elsevier Inc. All rights reserved.
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页码:1 / 7
页数:7
相关论文
共 38 条
[11]   Comparison of outbreak and nonoutbreak Acinetobacter baumannii strains by genotypic and phenotypic methods [J].
Dijkshoorn, L ;
Aucken, H ;
GernerSmidt, P ;
Janssen, P ;
Kaufmann, ME ;
Garaizar, J ;
Ursing, J ;
Pitt, TL .
JOURNAL OF CLINICAL MICROBIOLOGY, 1996, 34 (06) :1519-1525
[12]   IDENTIFICATION OF ACINETOBACTER ISOLATES IN THE A-CALCOACETICUS A-BAUMANNII COMPLEX BY RESTRICTION ANALYSIS OF THE 16S-23S RIBOSOMAL-RNA INTERGENIC SPACER SEQUENCES [J].
DOLZANI, L ;
TONIN, E ;
LAGATOLLA, C ;
PRANDIN, L ;
MONTIBRAGADIN, C .
JOURNAL OF CLINICAL MICROBIOLOGY, 1995, 33 (05) :1108-1113
[13]   PHAGE-TYPES AND SUSCEPTIBILITY TO 26 ANTIBIOTICS OF NOSOCOMIAL STRAINS OF ACINETOBACTER ISOLATED IN PORTUGAL [J].
FERREIRA, MOS ;
VIEU, JF ;
KLEIN, B .
JOURNAL OF INTERNATIONAL MEDICAL RESEARCH, 1984, 12 (06) :364-368
[14]   The epidemiology and control of Acinetobacter baumannii in health care facilities [J].
Fournier, PE ;
Richet, H .
CLINICAL INFECTIOUS DISEASES, 2006, 42 (05) :692-699
[15]   RIBOTYPING OF THE ACINETOBACTER CALCOACETICUS-ACINETOBACTER-BAUMANNII COMPLEX [J].
GERNERSMIDT, P .
JOURNAL OF CLINICAL MICROBIOLOGY, 1992, 30 (10) :2680-2685
[16]   RELIABILITY OF PHENOTYPIC TESTS FOR IDENTIFICATION OF ACINETOBACTER SPECIES [J].
GERNERSMIDT, P ;
TJERNBERG, I ;
URSING, J .
JOURNAL OF CLINICAL MICROBIOLOGY, 1991, 29 (02) :277-282
[17]   CLINICAL AND MOLECULAR EPIDEMIOLOGY OF ACINETOBACTER INFECTIONS SENSITIVE ONLY TO POLYMYXIN-B AND SULBACTAM [J].
GO, ES ;
URBAN, C ;
BURNS, J ;
KREISWIRTH, B ;
EISNER, W ;
MARIANO, N ;
MOSINKASNIPAS, K ;
RAHAL, JJ .
LANCET, 1994, 344 (8933) :1329-1332
[18]  
GRIMONT PAD, 2001, NEW APPROACHES GENER, P107
[19]   Multicenter study using standardized protocols and reagents for evaluation of reproducibility of PCR-based fingerprinting of Acinetobacter spp. [J].
Grundmann, HJ ;
Towner, KJ ;
Dijkshoorn, L ;
GernerSmidt, P ;
Maher, M ;
Seifert, H ;
Vaneechoutte, M .
JOURNAL OF CLINICAL MICROBIOLOGY, 1997, 35 (12) :3071-3077
[20]   Identification to the species level and differentiation between strains of Aspergillus clinical isolates by automated repetitive-sequence-based PCR [J].
Healy, A ;
Reece, K ;
Walton, D ;
Huong, J ;
Shah, K ;
Kontoyiannis, DP .
JOURNAL OF CLINICAL MICROBIOLOGY, 2004, 42 (09) :4016-4024