Formate Assimilation: The Metabolic Architecture of Natural and Synthetic Pathways

被引:132
作者
Bar-Even, Arren [1 ]
机构
[1] Max Planck Inst Mol Plant Physiol, Muhlenberg 1, D-14476 Potsdam, Germany
关键词
GLYCINE CLEAVAGE SYSTEM; ESCHERICHIA-COLI; CARBON-DIOXIDE; ELECTROCHEMICAL REDUCTION; FORMIC-ACID; L-THREONINE; COA LIGASE; 3-OXOACYL-COA THIOLASE; CATALYTIC MECHANISM; MALIC ENZYME;
D O I
10.1021/acs.biochem.6b00495
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Formate may become an ideal mediator between the physicochemical and biological realms, as it can be produced efficiently from multiple available sources, such as electricity and biomass, and serve as one of the simplest organic compounds for providing both carbon and energy to living cells. However, limiting the realization of formate as a microbial feedstock is the low diversity of formate-fixing enzymes and thereby the small number of naturally occurring formate-assimilation pathways. Here, the natural enzymes and pathways supporting formate assimilation are presented and discussed together with proposed synthetic routes that could permit growth on formate via existing as well as novel formate-fixing reactions. By considering such synthetic routes, the diversity of metabolic solutions for formate assimilation can be expanded dramatically, such that different host organisms, cultivation conditions, and desired products could be matched with the most suitable pathway. Astute application of old and new formate assimilation pathways may thus become a cornerstone in the development of sustainable strategies for microbial production of value-added chemicals.
引用
收藏
页码:3851 / 3863
页数:13
相关论文
共 98 条
[11]   Does acetogenesis really require especially low reduction potential? [J].
Bar-Even, Arren .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 2013, 1827 (03) :395-400
[12]   Thermodynamic constraints shape the structure of carbon fixation pathways [J].
Bar-Even, Arren ;
Flamholz, Avi ;
Noor, Elad ;
Milo, Ron .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 2012, 1817 (09) :1646-1659
[13]   A survey of carbon fixation pathways through a quantitative lens [J].
Bar-Even, Arren ;
Noor, Elad ;
Milo, Ron .
JOURNAL OF EXPERIMENTAL BOTANY, 2012, 63 (06) :2325-2342
[14]   Design and analysis of synthetic carbon fixation pathways [J].
Bar-Even, Arren ;
Noor, Elad ;
Lewis, Nathan E. ;
Milo, Ron .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (19) :8889-8894
[15]   Mechanism and substrate stereochemistry of 2-amino-3-oxobutyrate CoA ligase: implications for 5-aminolevulinate synthase and related enzymes [J].
Bashir, Qamar ;
Rashid, Naeem ;
Akhtar, Muhammad .
CHEMICAL COMMUNICATIONS, 2006, (48) :5065-5067
[16]  
Becker A, 1999, NAT STRUCT BIOL, V6, P969
[17]   Crystallographic snapshots of oxalyl-CoA decarboxylase give insights into catalysis by nonoxidative ThDP-dependent decarboxylases [J].
Berthold, Catrine L. ;
Toyota, Cory G. ;
Moussatche, Patricia ;
Wood, Martin D. ;
Leeper, Finian ;
Richards, Nigel G. J. ;
Lindqvist, Ylva .
STRUCTURE, 2007, 15 (07) :853-861
[18]   Synthetic non-oxidative glycolysis enables complete carbon conservation [J].
Bogorad, Igor W. ;
Lin, Tzu-Shyang ;
Liao, James C. .
NATURE, 2013, 502 (7473) :693-+
[19]  
BOYLAN SA, 1981, J BIOL CHEM, V256, P1809
[20]   The Emergence and Early Evolution of Biological Carbon-Fixation [J].
Braakman, Rogier ;
Smith, Eric .
PLOS COMPUTATIONAL BIOLOGY, 2012, 8 (04)