Maize Plant Phenotyping: Comparing 3D Laser Scanning, Multi-View Stereo Reconstruction, and 3D Digitizing Estimates

被引:74
作者
Wang, Yongjian [1 ,2 ]
Wen, Weiliang [2 ,3 ]
Wu, Sheng [2 ,3 ]
Wang, Chuanyu [2 ,3 ]
Yu, Zetao [2 ,3 ]
Guo, Xinyu [2 ,3 ]
Zhao, Chunjiang [1 ,2 ,3 ]
机构
[1] Nanjing Agr Univ, Agr Coll, Nanjing 210095, Jiangsu, Peoples R China
[2] Beijing Res Ctr Informat Technol Agr, Beijing 100097, Peoples R China
[3] Natl Engn Res Ctr Informat Technol Agr, Beijing Key Lab Digital Plant, Beijing 100097, Peoples R China
基金
中国国家自然科学基金;
关键词
maize plant; phenotyping; three-dimensional digitizing; multi-view stereo; three-dimensional scanning; point cloud; CANOPY STRUCTURE; LIDAR; QUANTIFICATION; TOOL;
D O I
10.3390/rs11010063
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
High-throughput phenotyping technologies have become an increasingly important topic of crop science in recent years. Various sensors and data acquisition approaches have been applied to acquire the phenotyping traits. It is quite confusing for crop phenotyping researchers to determine an appropriate way for their application. In this study, three representative three-dimensional (3D) data acquisition approaches, including 3D laser scanning, multi-view stereo (MVS) reconstruction, and 3D digitizing, were evaluated for maize plant phenotyping in multi growth stages. Phenotyping traits accuracy, post-processing difficulty, device cost, data acquisition efficiency, and automation were considered during the evaluation process. 3D scanning provided satisfactory point clouds for medium and high maize plants with acceptable efficiency, while the results were not satisfactory for small maize plants. The equipment used in 3D scanning is expensive, but is highly automatic. MVS reconstruction provided satisfactory point clouds for small and medium plants, and point deviations were observed in upper parts of higher plants. MVS data acquisition, using low-cost cameras, exhibited the highest efficiency among the three evaluated approaches. The one-by-one pipeline data acquisition pattern allows the use of MVS high-throughput in further phenotyping platforms. Undoubtedly, enhancement of point cloud processing technologies is required to improve the extracted phenotyping traits accuracy for both 3D scanning and MVS reconstruction. Finally, 3D digitizing was time-consuming and labor intensive. However, it does not depend on any post-processing algorithms to extract phenotyping parameters and reliable phenotyping traits could be derived. The promising accuracy of 3D digitizing is a better verification choice for other 3D phenotyping approaches. Our study provides clear reference about phenotyping data acquisition of maize plants, especially for the affordable and portable field phenotyping platforms to be developed.
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页数:17
相关论文
共 45 条
[1]   Three-Dimensional Modeling of Weed Plants Using Low-Cost Photogrammetry [J].
Andujar, Dionisio ;
Calle, Mikel ;
Fernandez-Quintanilla, Cesar ;
Ribeiro, Angela ;
Dorado, Jose .
SENSORS, 2018, 18 (04)
[2]  
[Anonymous], 2011, EXTERNAL PUBLICATION
[3]  
[Anonymous], 2013, ACM TOG, DOI DOI 10.1145/2461912.2461913
[4]   Affordable Imaging Lab for Noninvasive Analysis of Biomass and Early Vigour in Cereal Crops [J].
Armoniene, Rita ;
Odilbekov, Firuz ;
Vivekanand, Vivekanand ;
Chawade, Aakash .
BIOMED RESEARCH INTERNATIONAL, 2018, 2018
[5]   A robot-assisted imaging pipeline for tracking the growths of maize ear and silks in a high-throughput phenotyping platform [J].
Brichet, Nicolas ;
Fournier, Christian ;
Turc, Olivier ;
Strauss, Olivier ;
Artzet, Simon ;
Pradal, Christophe ;
Welcker, Claude ;
Tardieu, Francois ;
Cabrera-Bosquet, Llorenc .
PLANT METHODS, 2017, 13
[6]   Image-based 3D canopy reconstruction to determine potential productivity in complex multi-species crop systems [J].
Burgess, Alexandra J. ;
Retkute, Renata ;
Pound, Michael P. ;
Mayes, Sean ;
Murchie, Erik H. .
ANNALS OF BOTANY, 2017, 119 (04) :517-532
[7]   High-throughput estimation of incident light, light interception and radiation-use efficiency of thousands of plants in a phenotyping platform [J].
Cabrera-Bosquet, Llorenc ;
Fournier, Christian ;
Brichet, Nicolas ;
Welcker, Claude ;
Suard, Benoit ;
Tardieu, Francois .
NEW PHYTOLOGIST, 2016, 212 (01) :269-281
[8]   Automatic morphological trait characterization for corn plants via 3D holographic reconstruction [J].
Chaivivatrakul, Supawadee ;
Tang, Lie ;
Dailey, Matthew N. ;
Nakarmi, Akash D. .
COMPUTERS AND ELECTRONICS IN AGRICULTURE, 2014, 109 :109-123
[9]   Machine Vision System for 3D Plant Phenotyping [J].
Chaudhury, Ayan ;
Ward, Christopher ;
Talasaz, Ali ;
Ivanov, Alexander G. ;
Brophy, Mark ;
Grodzinski, Bernard ;
Huner, Norman P. A. ;
Patel, Rajni, V ;
Barron, John L. .
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2019, 16 (06) :2009-2022
[10]   Genetic and environmental dissection of biomass accumulation in multi-genotype maize canopies [J].
Chen, Tsu-Wei ;
Cabrera-Bosquet, Llorenc ;
Prado, Santiago Alvarez ;
Perez, Raphael ;
Artzet, Simon ;
Pradal, Christophe ;
Coupel-Ledru, Aude ;
Fournier, Christian ;
Tardieu, Francois .
JOURNAL OF EXPERIMENTAL BOTANY, 2019, 70 (09) :2523-2534