Database of Nuclear Independent Chemical Shifts (NICS) versus NICSZZ of Polycyclic Aromatic Hydrocarbons (PAHs)

被引:29
作者
Alvarez-Ramirez, Fernando [1 ]
Ruiz-Morales, Yosadara [1 ]
机构
[1] Inst Mexicano Petr, Eje Cent Lazaro Cardenas Norte 152, Mexico City 07730, DF, Mexico
关键词
ELECTRON DELOCALIZATION; MAGNETIC AROMATICITY; RING CURRENTS; Y-RULE; DENSITY; MOLECULES; CRITERIA; ENERGY; SCAN; ANTIAROMATICITY;
D O I
10.1021/acs.jcim.9b00909
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
In the present contribution, we have developed a database, called the FAR-database, where the acronym FAR stands for Fused Aromatic Rings, which presents the results of nuclear independent chemical shifts calculations, NICS(0), NICS(1), NICS(0)(zz), and NICS(1)(zz), of 660 neutral benzenoid-PAHs and cyclopenta-fused PAHs. The FAR-database provides NICS data of aromaticity of PAHs that could be used in data science and machine learning. To the best of our knowledge, no such database is available in the literature. The importance of this database lies in its potential to transform data into insight and knowledge. Additionally, a new visual representation of the NICS aromaticity pattern, based on the magnitude of the NICS value, is presented. Nowadays calculations of NICS(0)(zz) or NICS(1)(zz) have become popular methods to evaluate aromaticity of systems. By looking at all the 660 systems in the FAR-database, it becomes evident that NICS(0), NICS(1), and NICS(1)(zz) present similar NICS aromaticity patterns for most of the systems. But the NICS aromaticity patterns found with NICS(0)(zz) in many cases do not agree with the NICS aromaticity patterns found with NICS(0), NICS(1), and NICS(1)(zz). There are cases where the NICS(0)(zz) aromaticity pattern does not show an aromatic character at all. From XY NICS scan at planes from Z = 0 to Z = 1, it is found that as the Z-height is increased, the pi-electron ring current effects are dominant, and the c-bonding contributions are diminished. Therefore, it is recommended here to compute NICS(1)(zz) instead of NICS(0)(zz) when analyzing NICS of PAHs.
引用
收藏
页码:611 / 620
页数:10
相关论文
共 91 条
[1]   Interpreting the behavior of the NICSzz by resolving in orbitals, sign, and positions [J].
Acke, Guillaume ;
Van Damme, Sofie ;
Havenith, Remco W. A. ;
Bultinck, Patrick .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2018, 39 (09) :511-519
[2]   Nucleus-independent chemical shifts and local aromaticities in large polycyclic aromatic hydrocarbons [J].
Aihara, J .
CHEMICAL PHYSICS LETTERS, 2002, 365 (1-2) :34-39
[3]   Membrane proteins structures: A review on computational modeling tools [J].
Almeida, Jose G. ;
Preto, Antonio J. ;
Koukos, Panagiotis I. ;
Bonvin, Alexandre M. J. J. ;
Moreira, Irina S. .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 2017, 1859 (10) :2021-2039
[4]   Island versus Archipelago Architecture for Asphaltenes: Polycyclic Aromatic Hydrocarbon Dimer Theoretical Studies [J].
Alvarez-Ramirez, Fernando ;
Ruiz-Morales, Yosadara .
ENERGY & FUELS, 2013, 27 (04) :1791-1808
[5]  
[Anonymous], DMOL3 REL 4 0
[6]  
[Anonymous], 2010, ACC MS MOD VERS 5 5
[7]   Polynuclear heterocyclic aromatic types. Part II. Some anhydronium bases. [J].
Armit, JW ;
Robinson, R .
JOURNAL OF THE CHEMICAL SOCIETY, 1925, 127 :1604-1618
[8]   Unification of ground-state aromaticity criteria - structure, electron delocalization, and energy - in light of the quantum chemical topology [J].
Badri, Zahra ;
Foroutan-Nejad, Cina .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2016, 18 (17) :11693-11699
[9]   Crocker, not Armit and Robinson, Begat the six aromatic electrons [J].
Balaban, AT ;
Schleyer, PV ;
Rzepa, HS .
CHEMICAL REVIEWS, 2005, 105 (10) :3436-3447
[10]   DENSITY-FUNCTIONAL EXCHANGE-ENERGY APPROXIMATION WITH CORRECT ASYMPTOTIC-BEHAVIOR [J].
BECKE, AD .
PHYSICAL REVIEW A, 1988, 38 (06) :3098-3100