Cryo-EM structures from sub-nl volumes using pin-printing and jet vitrification

被引:90
作者
Ravelli, Raimond B. G. [1 ]
Nijpels, Frank J. T. [1 ,2 ]
Henderikx, Rene J. M. [1 ,2 ]
Weissenberger, Giulia [1 ,2 ]
Thewessem, Sanne [3 ]
Gijsbers, Abril [1 ]
Beulen, Bart W. A. M. M. [2 ,3 ]
Lopez-Iglesias, Carmen [1 ]
Peters, Peter J. [1 ,2 ]
机构
[1] Maastricht Univ, Div Nanoscopy, Maastricht Multimodal Mol Imaging Inst M4i, Maastricht, Netherlands
[2] CryoSol World, Maastricht, Netherlands
[3] Maastricht Univ, Instrument Dev Engn & Evaluat IDEE, Maastricht, Netherlands
关键词
CRYOELECTRON MICROSCOPY; GRID PREPARATION; SPOTITON; FEATURES; SYSTEM;
D O I
10.1038/s41467-020-16392-5
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The increasing demand for cryo-electron microscopy (cryo-EM) reveals drawbacks in current sample preparation protocols, such as sample waste and lack of reproducibility. Here, we present several technical developments that provide efficient sample preparation for cryo-EM studies. Pin printing substantially reduces sample waste by depositing only a sub-nanoliter volume of sample on the carrier surface. Sample evaporation is mitigated by dewpoint control feedback loops. The deposited sample is vitrified by jets of cryogen followed by submersion into a cryogen bath. Because the cryogen jets cool the sample from the center, premounted autogrids can be used and loaded directly into automated cryo-EMs. We integrated these steps into a single device, named VitroJet. The device's performance was validated by resolving four standard proteins (apoferritin, GroEL, worm hemoglobin, beta-galactosidase) to similar to 3 angstrom resolution using a 200-kV electron microscope. The VitroJet offers a promising solution for improved automated sample preparation in cryo-EM studies. There is a need to further improve the automation of cryo-EM sample preparation to make it more easily accessible for non-specialists, reduce sample waste and increase reproducibility. Here, the authors present VitroJet, a single device, where sub-nl volumes of samples are deposited by pin printing thus eliminating the need for sample blotting, which is followed by jet vitrification, and they show that high-resolution structures can be obtained using four standard proteins.
引用
收藏
页数:9
相关论文
共 50 条
[1]   Single-particle cryo-EM using alignment by classification (ABC): the structure of Lumbricus terrestris haemoglobin [J].
Afanasyev, Pavel ;
Seer-Linnemayr, Charlotte ;
Ravelli, Raimond B. G. ;
Matadeen, Rishi ;
De Carlo, Sacha ;
Alewijnse, Bart ;
Portugal, Rodrigo V. ;
Pannu, Navraj S. ;
Schatz, Michael ;
van Heel, Marin .
IUCRJ, 2017, 4 :678-694
[2]   New tools for the analysis and validation of cryo-EM maps and atomic models [J].
Afonine, Pavel V. ;
Klaholz, Bruno P. ;
Moriarty, Nigel W. ;
Poon, Billy K. ;
Sobolev, Oleg V. ;
Terwilliger, Thomas C. ;
Adams, Paul D. ;
Urzhumtsev, Alexandre .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2018, 74 :814-840
[3]   Blotting-free and lossless cryo-electron microscopy grid preparation from nanoliter-sized protein samples and single-cell extracts [J].
Arnold, Stefan A. ;
Albiez, Stefan ;
Bieri, Andrej ;
Syntychaki, Anastasia ;
Adaixo, Ricardo ;
McLeod, Robert A. ;
Goldie, Kenneth N. ;
Stahlberg, Henning ;
Braun, Thomas .
JOURNAL OF STRUCTURAL BIOLOGY, 2017, 197 (03) :220-226
[4]   Delivery of femtolitre droplets using surface acoustic wave based atomisation for cryo-EM grid preparation [J].
Ashtiani, Dariush ;
Venugopal, Hari ;
Belousoff, Matthew ;
Spicer, Bradley ;
Mak, Johnson ;
Neild, Adrian ;
de Marco, Alex .
JOURNAL OF STRUCTURAL BIOLOGY, 2018, 203 (02) :94-101
[5]   CRYO-ELECTRON MICROSCOPY SHAPES UP [J].
Baker, Monya .
NATURE, 2018, 561 (7724) :565-567
[6]   2.2 Å resolution cryo-EM structure of β-galactosidase in complex with a cell-permeant inhibitor [J].
Bartesaghi, Alberto ;
Merk, Alan ;
Banerjee, Soojay ;
Matthies, Doreen ;
Wu, Xiongwu ;
Milne, Jacqueline L. S. ;
Subramaniam, Sriram .
SCIENCE, 2015, 348 (6239) :1147-1151
[7]   CONTROLLED ENVIRONMENT VITRIFICATION SYSTEM - AN IMPROVED SAMPLE PREPARATION TECHNIQUE [J].
BELLARE, JR ;
DAVIS, HT ;
SCRIVEN, LE ;
TALMON, Y .
JOURNAL OF ELECTRON MICROSCOPY TECHNIQUE, 1988, 10 (01) :87-111
[8]   ANALYSIS OF TRANSIENT STRUCTURES BY CRYOMICROSCOPY COMBINED WITH RAPID MIXING OF SPRAY DROPLETS [J].
BERRIMAN, J ;
UNWIN, N .
ULTRAMICROSCOPY, 1994, 56 (04) :241-252
[9]   Maximal Air Bubble Entrainment at Liquid-Drop Impact [J].
Bouwhuis, Wilco ;
van der Veen, Roeland C. A. ;
Tuan Tran ;
Keij, Diederik L. ;
Winkels, Koen G. ;
Peters, Ivo R. ;
van der Meer, Devaraj ;
Sun, Chao ;
Snoeijer, Jacco H. ;
Lohse, Detlef .
PHYSICAL REVIEW LETTERS, 2012, 109 (26)
[10]   CRYOFIXATION OF TISSUE SURFACES BY A PROPANE JET FOR ELECTRON-MICROSCOPY [J].
BURSTEIN, NL ;
MAURICE, DM .
MICRON, 1978, 9 (04) :191-198