Recent Progress Using High-throughput Sequencing Technologies in Plant Molecular Breeding

被引:35
作者
Gao, Qiang [1 ]
Yue, Guidong [1 ]
Li, Wenqi [1 ]
Wang, Junyi [1 ]
Xu, Jiaohui [1 ]
Yin, Ye [1 ]
机构
[1] Beijing Genom Inst Shenzhen, Shenzhen 518083, Peoples R China
关键词
High-throughput sequencing; genomics; molecular breeding; GENOME-WIDE PATTERNS; SNP DISCOVERY; GENETIC-VARIATION; DRAFT GENOME; DIVERSITY; IDENTIFICATION; TRANSCRIPTOME; MUTATION; MUTANTS; TRAITS;
D O I
10.1111/j.1744-7909.2012.01115.x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
[ Ye Yin ] High-throughput sequencing is a revolutionary technological innovation in DNA sequencing. This technology has an ultra-low cost per base of sequencing and an overwhelmingly high data output. High-throughput sequencing has brought novel research methods and solutions to the research fields of genomics and post-genomics. Furthermore, this technology is leading to a new molecular breeding revolution that has landmark significance for scientific research and enables us to launch multi-level, multi-faceted, and multi-extent studies in the fields of crop genetics, genomics, and crop breeding. In this paper, we review progress in the application of high-throughput sequencing technologies to plant molecular breeding studies.
引用
收藏
页码:215 / 227
页数:13
相关论文
共 54 条
[1]   De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera) [J].
Al-Dous, Eman K. ;
George, Binu ;
Al-Mahmoud, Maryam E. ;
Al-Jaber, Moneera Y. ;
Wang, Hao ;
Salameh, Yasmeen M. ;
Al-Azwani, Eman K. ;
Chaluvadi, Srinivasa ;
Pontaroli, Ana C. ;
DeBarry, Jeremy ;
Arondel, Vincent ;
Ohlrogge, John ;
Saie, Imad J. ;
Suliman-Elmeer, Khaled M. ;
Bennetzen, Jeffrey L. ;
Kruegger, Robert R. ;
Malek, Joel A. .
NATURE BIOTECHNOLOGY, 2011, 29 (06) :521-U84
[2]   Multiplexed shotgun genotyping for rapid and efficient genetic mapping [J].
Andolfatto, Peter ;
Davison, Dan ;
Erezyilmaz, Deniz ;
Hu, Tina T. ;
Mast, Joshua ;
Sunayama-Morita, Tomoko ;
Stern, David L. .
GENOME RESEARCH, 2011, 21 (04) :610-617
[3]   Next-generation DNA sequencing techniques [J].
Ansorge, Wilhelm J. .
NEW BIOTECHNOLOGY, 2009, 25 (04) :195-203
[4]   The genome of Theobroma cacao [J].
Argout, Xavier ;
Salse, Jerome ;
Aury, Jean-Marc ;
Guiltinan, Mark J. ;
Droc, Gaetan ;
Gouzy, Jerome ;
Allegre, Mathilde ;
Chaparro, Cristian ;
Legavre, Thierry ;
Maximova, Siela N. ;
Abrouk, Michael ;
Murat, Florent ;
Fouet, Olivier ;
Poulain, Julie ;
Ruiz, Manuel ;
Roguet, Yolande ;
Rodier-Goud, Maguy ;
Barbosa-Neto, Jose Fernandes ;
Sabot, Francois ;
Kudrna, Dave ;
Ammiraju, Jetty Siva S. ;
Schuster, Stephan C. ;
Carlson, John E. ;
Sallet, Erika ;
Schiex, Thomas ;
Dievart, Anne ;
Kramer, Melissa ;
Gelley, Laura ;
Shi, Zi ;
Berard, Aurelie ;
Viot, Christopher ;
Boccara, Michel ;
Risterucci, Ange Marie ;
Guignon, Valentin ;
Sabau, Xavier ;
Axtell, Michael J. ;
Ma, Zhaorong ;
Zhang, Yufan ;
Brown, Spencer ;
Bourge, Mickael ;
Golser, Wolfgang ;
Song, Xiang ;
Clement, Didier ;
Rivallan, Ronan ;
Tahi, Mathias ;
Akaza, Joseph Moroh ;
Pitollat, Bertrand ;
Gramacho, Karina ;
D'Hont, Angelique ;
Brunel, Dominique .
NATURE GENETICS, 2011, 43 (02) :101-108
[5]   Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis [J].
Ashelford, Kevin ;
Eriksson, Maria E. ;
Allen, Christopher M. ;
D'Amore, Rosalinda ;
Johansson, Mikael ;
Gould, Peter ;
Kay, Suzanne ;
Millar, Andrew J. ;
Hall, Neil ;
Hall, Anthony .
GENOME BIOLOGY, 2011, 12 (03)
[6]   Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers [J].
Baird, Nathan A. ;
Etter, Paul D. ;
Atwood, Tressa S. ;
Currey, Mark C. ;
Shiver, Anthony L. ;
Lewis, Zachary A. ;
Selker, Eric U. ;
Cresko, William A. ;
Johnson, Eric A. .
PLOS ONE, 2008, 3 (10)
[7]   Prospects for genomewide selection for quantitative traits in maize [J].
Bernardo, Rex ;
Yu, Jianming .
CROP SCIENCE, 2007, 47 (03) :1082-1090
[8]   Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula [J].
Branca, Antoine ;
Paape, Timothy D. ;
Zhou, Peng ;
Briskine, Roman ;
Farmer, Andrew D. ;
Mudge, Joann ;
Bharti, Arvind K. ;
Woodward, Jimmy E. ;
May, Gregory D. ;
Gentzbittel, Laurent ;
Ben, Cecile ;
Denny, Roxanne ;
Sadowsky, Michael J. ;
Ronfort, Joelle ;
Bataillon, Thomas ;
Young, Nevin D. ;
Tiffin, Peter .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (42) :E864-E870
[9]   Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley [J].
Chutimanitsakun, Yada ;
Nipper, Rick W. ;
Cuesta-Marcos, Alfonso ;
Cistue, Luis ;
Corey, Ann ;
Filichkina, Tanya ;
Johnson, Eric A. ;
Hayes, Patrick M. .
BMC GENOMICS, 2011, 12
[10]  
Cooper M, 2006, PLANT BREEDING: ARNEL R HALLAUER INTERNATIONAL SYMPOSIUM, P141