Rotational Diffusion of Membrane Proteins in Crowded Membranes

被引:13
|
作者
Javanainen, Matti [1 ,2 ]
Ollila, O. H. Samuli [3 ]
Martinez-Seara, Hector [1 ]
机构
[1] Czech Acad Sci, Inst Organ Chem & Biochem, Prague 16610, Czech Republic
[2] Tampere Univ, Computat Phys Lab, Tampere 33720, Finland
[3] Univ Helsinki, Inst Biotechnol, FIN-00014 Helsinki, Finland
来源
JOURNAL OF PHYSICAL CHEMISTRY B | 2020年 / 124卷 / 15期
基金
芬兰科学院;
关键词
LIPID-MEMBRANES; BROWNIAN-MOTION; FORCE-FIELD; RHODOPSIN; ORIENTATION; DYNAMICS;
D O I
10.1021/acs.jpcb.0c00884
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Membrane proteins travel along cellular membranes and reorient themselves to form functional oligomers and proteinlipid complexes. Following the Saffman-Delbruck model, protein-radius sets the rate of this diffusive motion. However, it is unclear how this model, derived for ideal and dilute membranes, performs under crowded conditions of cellular membranes. Here, we study the rotational motion of membrane proteins using molecular dynamics simulations of coarse-grained membranes and 2-dimensional Lennard-Jones fluids with varying levels of crowding. We find that the Saffman-Delbruck model captures the size-dependency of rotational diffusion under dilute conditions where protein-protein interactions are negligible, whereas stronger scaling laws arise under crowding. Together with our recent work on lateral diffusion, our results reshape the description of protein dynamics in native membrane environments: The translational and rotational motions of proteins with small transmembrane domains are rapid, whereas larger proteins or protein complexes display substantially slower dynamics.
引用
收藏
页码:2994 / 3001
页数:8
相关论文
共 50 条
  • [31] Rotational and Translational Diffusion of Proteins as a Function of Concentration
    Bashardanesh, Zahedeh
    Elf, Johan
    Zhang, Haiyang
    van der Spoel, David
    ACS OMEGA, 2019, 4 (24): : 20654 - 20664
  • [32] DIFFUSION IN MEMBRANES - HOW MUCH DOES THE VISCOSITY OF THE AQUEOUS PHASE AFFECT DIFFUSION RATES OF MEMBRANE PROTEINS AND LIPIDS
    WEY, CL
    CONE, RA
    GAFFNEY, BJ
    BIOPHYSICAL JOURNAL, 1979, 25 (02) : A284 - A284
  • [33] Lateral Diffusion of Membrane Proteins
    Ramadurai, Sivaramakrishnan
    Holt, Andrea
    Krasnikov, Victor
    van den Bogaart, Geert
    Killian, J. Antoinette
    Poolman, Bert
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2009, 131 (35) : 12650 - 12656
  • [34] ROTATIONAL DIFFUSION OF RHODOPSIN IN VISUAL RECEPTOR MEMBRANE
    CONE, RA
    NATURE-NEW BIOLOGY, 1972, 236 (63): : 39 - +
  • [35] Membrane protein structure from rotational diffusion
    Das, Bibhuti B.
    Park, Sang Ho
    Opella, Stanley J.
    BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 2015, 1848 (01): : 229 - 245
  • [36] HINDERED DIFFUSION OF PROTEINS IN POROUS MEMBRANES
    ROBERTSON, BC
    ZYDNEY, AL
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1988, 195 : 232 - IEC
  • [37] LATERAL DIFFUSION OF MEMBRANE PROTEINS AT CELL MEMBRANE
    Fan, Lei
    Fan, Tian You
    MODERN PHYSICS LETTERS B, 2010, 24 (14): : 1533 - 1540
  • [38] Diffusion of proteins in crowded solutions studied by docking-based modeling
    Singh, Amar
    Kundrotas, Petras J.
    Vakser, Ilya A.
    JOURNAL OF CHEMICAL PHYSICS, 2024, 161 (09):
  • [39] PHOSPHORESCENCE DEPOLARIZATION AND THE MEASUREMENT OF ROTATIONAL MOTION OF PROTEINS IN MEMBRANES
    MOORE, C
    BOXER, D
    GARLAND, P
    FEBS LETTERS, 1979, 108 (01) : 161 - 166
  • [40] Membranes, translocons, and the folding of membrane proteins
    White, Stephen H.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2006, 231