Rotational Diffusion of Membrane Proteins in Crowded Membranes

被引:13
|
作者
Javanainen, Matti [1 ,2 ]
Ollila, O. H. Samuli [3 ]
Martinez-Seara, Hector [1 ]
机构
[1] Czech Acad Sci, Inst Organ Chem & Biochem, Prague 16610, Czech Republic
[2] Tampere Univ, Computat Phys Lab, Tampere 33720, Finland
[3] Univ Helsinki, Inst Biotechnol, FIN-00014 Helsinki, Finland
来源
JOURNAL OF PHYSICAL CHEMISTRY B | 2020年 / 124卷 / 15期
基金
芬兰科学院;
关键词
LIPID-MEMBRANES; BROWNIAN-MOTION; FORCE-FIELD; RHODOPSIN; ORIENTATION; DYNAMICS;
D O I
10.1021/acs.jpcb.0c00884
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Membrane proteins travel along cellular membranes and reorient themselves to form functional oligomers and proteinlipid complexes. Following the Saffman-Delbruck model, protein-radius sets the rate of this diffusive motion. However, it is unclear how this model, derived for ideal and dilute membranes, performs under crowded conditions of cellular membranes. Here, we study the rotational motion of membrane proteins using molecular dynamics simulations of coarse-grained membranes and 2-dimensional Lennard-Jones fluids with varying levels of crowding. We find that the Saffman-Delbruck model captures the size-dependency of rotational diffusion under dilute conditions where protein-protein interactions are negligible, whereas stronger scaling laws arise under crowding. Together with our recent work on lateral diffusion, our results reshape the description of protein dynamics in native membrane environments: The translational and rotational motions of proteins with small transmembrane domains are rapid, whereas larger proteins or protein complexes display substantially slower dynamics.
引用
收藏
页码:2994 / 3001
页数:8
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