Membrane proteins travel along cellular membranes and reorient themselves to form functional oligomers and proteinlipid complexes. Following the Saffman-Delbruck model, protein-radius sets the rate of this diffusive motion. However, it is unclear how this model, derived for ideal and dilute membranes, performs under crowded conditions of cellular membranes. Here, we study the rotational motion of membrane proteins using molecular dynamics simulations of coarse-grained membranes and 2-dimensional Lennard-Jones fluids with varying levels of crowding. We find that the Saffman-Delbruck model captures the size-dependency of rotational diffusion under dilute conditions where protein-protein interactions are negligible, whereas stronger scaling laws arise under crowding. Together with our recent work on lateral diffusion, our results reshape the description of protein dynamics in native membrane environments: The translational and rotational motions of proteins with small transmembrane domains are rapid, whereas larger proteins or protein complexes display substantially slower dynamics.
机构:
Michigan State Univ, Dept Biochem & Mol Biol, E Lansing, MI 48824 USAMichigan State Univ, Dept Biochem & Mol Biol, E Lansing, MI 48824 USA
Nawrocki, Grzegorz
Im, Wonpil
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Lehigh Univ, Dept Biol Sci, Bethlehem, PA 18015 USA
Lehigh Univ, Dept Bioengn, Bethlehem, PA 18015 USAMichigan State Univ, Dept Biochem & Mol Biol, E Lansing, MI 48824 USA
Im, Wonpil
Sugita, Yuji
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RIKEN, Cluster Pioneering Res, Wako, Saitama 3510198, Japan
RIKEN, Ctr Computat Res, Kobe, Hyogo 6400047, Japan
RIKEN, Ctr Biosyst Dynam Res, Kobe, Hyogo 6400047, JapanMichigan State Univ, Dept Biochem & Mol Biol, E Lansing, MI 48824 USA
Sugita, Yuji
Feig, Michael
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Michigan State Univ, Dept Biochem & Mol Biol, E Lansing, MI 48824 USA
RIKEN, Ctr Biosyst Dynam Res, Kobe, Hyogo 6400047, JapanMichigan State Univ, Dept Biochem & Mol Biol, E Lansing, MI 48824 USA
机构:
Michigan State Univ, Dept Biochem & Mol Biol, 603 Wilson Rd,Room 218 BCH, E Lansing, MI 48824 USAMichigan State Univ, Dept Biochem & Mol Biol, 603 Wilson Rd,Room 218 BCH, E Lansing, MI 48824 USA
Nawrocki, Grzegorz
Karaboga, Alp
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Michigan State Univ, Dept Biochem & Mol Biol, 603 Wilson Rd,Room 218 BCH, E Lansing, MI 48824 USAMichigan State Univ, Dept Biochem & Mol Biol, 603 Wilson Rd,Room 218 BCH, E Lansing, MI 48824 USA
Karaboga, Alp
Sugita, Yuji
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RIKEN, Theoret Mol Sci Lab, 2-1 Hirosawa, Wako, Saitama 3510198, Japan
RIKEN, Lab Biomol Funct Simulat, Ctr Biosyst Dynam Res, 1-6-5 Minatojima Minamimachi, Kobe, Hyogo 6500047, JapanMichigan State Univ, Dept Biochem & Mol Biol, 603 Wilson Rd,Room 218 BCH, E Lansing, MI 48824 USA
Sugita, Yuji
Feig, Michael
论文数: 0引用数: 0
h-index: 0
机构:
Michigan State Univ, Dept Biochem & Mol Biol, 603 Wilson Rd,Room 218 BCH, E Lansing, MI 48824 USA
RIKEN, Lab Biomol Funct Simulat, Ctr Biosyst Dynam Res, 1-6-5 Minatojima Minamimachi, Kobe, Hyogo 6500047, JapanMichigan State Univ, Dept Biochem & Mol Biol, 603 Wilson Rd,Room 218 BCH, E Lansing, MI 48824 USA