Algoriphagus pacificus sp. nov. and Algoriphagus oliviformis sp. nov., isolated from a mariculture fishpond

被引:1
作者
Lu, Huibin [1 ,2 ]
Cai, Zhipeng [1 ,2 ,3 ]
Deng, Tongchu [1 ,2 ]
Qian, Youfeng [1 ,2 ]
Xu, Meiying [1 ,2 ]
机构
[1] Guangdong Acad Sci, Guangdong Inst Microbiol, Guangdong Prov Key Lab Microbial Culture Collect, Guangzhou 510070, Peoples R China
[2] State Key Lab Appl Microbiol Southern China, Guangzhou 510070, Peoples R China
[3] South China Agr Univ, Coll Life Sci, Guangzhou 510642, Peoples R China
关键词
Algoriphagus; mariculture fishpond; polyphasic taxonomy; ET-AL; 2003; GEN; NOV; EMENDED DESCRIPTION; HONGIELLA YI; SEA; SEQUENCES; SEDIMENT; QUALITY; MEMBER; WATER;
D O I
10.1099/ijsem.0.004914
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Two Gram-stain-negative, catalase-positive, oxidase-negative, rod-shaped, non-flagellated, non-spore-forming and non-motile strains (YJ13C(T) and H41(T)) were isolated from a mariculture fishpond in PR China. Comparisons based on 165 rRNA gene sequences indicated that YJ13C(T) and H41(T) shared 165 rRNA gene sequences similarities between 92.6 and 99.2% with species of the genus Algoriphagus. YJ13C(T) only shared 93.8% 165 rRNA gene sequence similarity with H41(T). The reconstructed phylogenetic and phylogenomic trees indicated that YJ13C(T) and H41(T) clustered closely with species of the genus Algoriphagus. The calculated pairwise orthologous average nucleotide identity with USEARCH (OrthoANlu) values between strains YJ13C(T) and H41(T) and other related strains were all less than 79.5%. The OrthoANlu value between YJ13C(T) and H41(T) was only 69.9%. MK-7 was the predominant respiratory quinone of YJ13C(T) and H41(T) and their major cellular fatty acids contained iso-C-15:0, C-16:0 omega 7c and C-17:1 omega 9c. The polar lipids profiles of YJ13C(T) and H41(T) consisted of phosphatidylethanolamine and several kinds of unidentified lipids. Combining the above descriptions, strains YJ13C(T) and H41(T) represent two distinct novel species of the genus Algoriphagus, for which the names Algoriphagus pacificus sp. nov. (type strain YJ13C(T) =GDMCC 1.2178T=KCTC 82450T) and Algoriphagus oliviformis sp. nov. (type strain H41T=GDMCC 1.2179(T)=KCTC 82451(T)) are proposed.
引用
收藏
页数:8
相关论文
共 40 条
[1]  
ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999
[2]   SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].
Bankevich, Anton ;
Nurk, Sergey ;
Antipov, Dmitry ;
Gurevich, Alexey A. ;
Dvorkin, Mikhail ;
Kulikov, Alexander S. ;
Lesin, Valery M. ;
Nikolenko, Sergey I. ;
Son Pham ;
Prjibelski, Andrey D. ;
Pyshkin, Alexey V. ;
Sirotkin, Alexander V. ;
Vyahhi, Nikolay ;
Tesler, Glenn ;
Alekseyev, Max A. ;
Pevzner, Pavel A. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477
[3]   Trimmomatic: a flexible trimmer for Illumina sequence data [J].
Bolger, Anthony M. ;
Lohse, Marc ;
Usadel, Bjoern .
BIOINFORMATICS, 2014, 30 (15) :2114-2120
[4]   Algoriphagus ratkowskyi gen. nov., sp nov., Brumimicrobium glaciale gen. nov., sp nov., Cryomorpha ignava gen. nov., sp nov and Crocinitomix catalasitica gen. nov., sp nov., novel flavobacteria isolated from various polar habitats [J].
Bowman, JP ;
Mancuso, C ;
Nichols, CM ;
Gibson, JAE .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2003, 53 :1343-1355
[5]   GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis [J].
Contreras-Moreira, Bruno ;
Vinuesa, Pablo .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2013, 79 (24) :7696-7701
[6]   EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J].
FELSENSTEIN, J .
JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) :368-376
[7]   Algoriphagus marinus sp nov., isolated from marine sediment and emended description of the genus Algoriphagus [J].
Han, Ji-Ru ;
Geng, Qing-Li ;
Wang, Feng-Qing ;
Du, Zong-Jun ;
Chen, Guan-Jun .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2017, 67 (07) :2412-2417
[8]   Prodigal: prokaryotic gene recognition and translation initiation site identification [J].
Hyatt, Doug ;
Chen, Gwo-Liang ;
LoCascio, Philip F. ;
Land, Miriam L. ;
Larimer, Frank W. ;
Hauser, Loren J. .
BMC BIOINFORMATICS, 2010, 11
[9]   Algoriphagus aestuariicola sp nov., isolated from estuary sediment [J].
Jia, Xiaomeng ;
Jia, Baolei ;
Kim, Kyung Hyun ;
Jeon, Che Ok .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2017, 67 (04) :914-919
[10]   Algoriphagus aestuarii sp nov., a member of the Cyclobacteriaceae isolated from a tidal-flat sediment of the Yellow Sea in Korea [J].
Jung, Yong-Taek ;
Lee, Jung-Sook ;
Yoon, Jung-Hoon .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2015, 65 :3439-3446