Germline CDH1 mutations are a significant contributor to the high frequency of early-onset diffuse gastric cancer cases in New Zealand Mori

被引:30
作者
Hakkaart, Christopher [1 ]
Ellison-Loschmann, Lis [2 ]
Day, Robert [1 ]
Sporle, Andrew [3 ]
Koea, Jonathan [4 ]
Harawira, Pauline [5 ]
Cheng, Soo [2 ]
Gray, Michelle [2 ]
Whaanga, Tracey [2 ]
Pearce, Neil [6 ]
Guilford, Parry [1 ]
机构
[1] Univ Otago, Ctr Translat Canc Res, Canc Genet Lab, POB 56, Dunedin 9054, New Zealand
[2] Massey Univ, Ctr Publ Hlth Res, Wellington, New Zealand
[3] Univ Auckland, Dept Stat, Auckland, New Zealand
[4] Waitemata Dist Hlth Board, Auckland, New Zealand
[5] Kimihauora Hlth Ctr, Tauranga, New Zealand
[6] London Sch Hyg & Trop Med, Dept Med Stat, London, England
关键词
E-cadherin; CDH1; New Zealand; Mori; Hereditary diffuse gastric cancer; Genetic predisposition testing; E-CADHERIN MUTATIONS; ASHKENAZI JEWISH WOMEN; OVARIAN-CANCER; FAMILIES; BREAST; BRCA1; GENOME; PENETRANCE; GUIDELINES; VARIANTS;
D O I
10.1007/s10689-018-0080-8
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
New Zealand Mori have a considerably higher incidence of gastric cancer compared to non-Mori, and are one of the few populations worldwide with a higher prevalence of diffuse-type disease. Pathogenic germline CDH1 mutations are causative of hereditary diffuse gastric cancer, a cancer predisposition syndrome primarily characterised by an extreme lifetime risk of developing diffuse gastric cancer. Pathogenic CDH1 mutations are well described in Mori families in New Zealand. However, the contribution of these mutations to the high incidence of gastric cancer is unknown. We have used next-generation sequencing, Sanger sequencing, and Multiplex Ligation-dependent Probe Amplification to examine germline CDH1 in an unselected series of 94 Mori gastric cancer patients and 200 healthy matched controls. Overall, 18% of all cases, 34% of cases diagnosed with diffuse-type gastric cancer, and 67% of cases diagnosed aged less than 45years carried pathogenic CDH1 mutations. After adjusting for the effect of screening known HDGC families, we estimate that 6% of all advanced gastric cancers and 13% of all advanced diffuse-type gastric cancers would carry germline CDH1 mutations. Our results demonstrate that germline CDH1 mutations are a significant contributor to the high frequency of diffuse gastric cancer in New Zealand Mori.
引用
收藏
页码:83 / 90
页数:8
相关论文
共 41 条
[1]   A method and server for predicting damaging missense mutations [J].
Adzhubei, Ivan A. ;
Schmidt, Steffen ;
Peshkin, Leonid ;
Ramensky, Vasily E. ;
Gerasimova, Anna ;
Bork, Peer ;
Kondrashov, Alexey S. ;
Sunyaev, Shamil R. .
NATURE METHODS, 2010, 7 (04) :248-249
[2]   A map of human genome variation from population-scale sequencing [J].
Altshuler, David ;
Durbin, Richard M. ;
Abecasis, Goncalo R. ;
Bentley, David R. ;
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Collins, Francis S. ;
De la Vega, Francisco M. ;
Donnelly, Peter ;
Egholm, Michael ;
Flicek, Paul ;
Gabriel, Stacey B. ;
Gibbs, Richard A. ;
Knoppers, Bartha M. ;
Lander, Eric S. ;
Lehrach, Hans ;
Mardis, Elaine R. ;
McVean, Gil A. ;
Nickerson, DebbieA. ;
Peltonen, Leena ;
Schafer, Alan J. ;
Sherry, Stephen T. ;
Wang, Jun ;
Wilson, Richard K. ;
Gibbs, Richard A. ;
Deiros, David ;
Metzker, Mike ;
Muzny, Donna ;
Reid, Jeff ;
Wheeler, David ;
Wang, Jun ;
Li, Jingxiang ;
Jian, Min ;
Li, Guoqing ;
Li, Ruiqiang ;
Liang, Huiqing ;
Tian, Geng ;
Wang, Bo ;
Wang, Jian ;
Wang, Wei ;
Yang, Huanming ;
Zhang, Xiuqing ;
Zheng, Huisong ;
Lander, Eric S. ;
Altshuler, David L. ;
Ambrogio, Lauren ;
Bloom, Toby ;
Cibulskis, Kristian ;
Fennell, Tim J. ;
Gabriel, Stacey B. .
NATURE, 2010, 467 (7319) :1061-1073
[3]  
[Anonymous], 2016, SOC REP 2016 PUR OR
[4]  
[Anonymous], CANC NEW REG DEATHS
[5]  
[Anonymous], NZ MED J
[6]   Hereditary diffuse gastric cancer: Diagnosis and management [J].
Blair, V ;
Martin, I ;
Shaw, D ;
Winship, I ;
Kerr, D ;
Arnold, J ;
Harawira, P ;
McLeod, M ;
Parry, S ;
Charlton, A ;
Findlay, M ;
Cox, B ;
Humar, B ;
More, H ;
Guilford, P .
CLINICAL GASTROENTEROLOGY AND HEPATOLOGY, 2006, 4 (03) :262-275
[7]   High incidence of 'diffuse type' sporadic gastric cancer in maori New Zealanders: Possible evince of further cancer susceptibility in addition to the known truncating germline E-cadherin mutations in Maori families with hereditary diffuse gastric cancer? [J].
Blair, V ;
Charlton, A ;
Sutton, T ;
Martin, I .
GASTROENTEROLOGY, 2003, 124 (04) :A548-A548
[8]   Trimmomatic: a flexible trimmer for Illumina sequence data [J].
Bolger, Anthony M. ;
Lohse, Marc ;
Usadel, Bjoern .
BIOINFORMATICS, 2014, 30 (15) :2114-2120
[9]   Germline E-cadherin mutations in hereditary diffuse gastric cancer: assessment of 42 new families and review of genetic screening criteria [J].
Brooks-Wilson, AR ;
Kaurah, P ;
Suriano, G ;
Leach, S ;
Senz, J ;
Grehan, N ;
Butterfield, YSN ;
Jeyes, J ;
Schinas, J ;
Bacani, J ;
Kelsey, M ;
Ferreira, P ;
MacGillivray, B ;
Macleod, P ;
Micek, M ;
Ford, J ;
Foulkes, W ;
Australie, K ;
Greenberg, C ;
LaPointe, M ;
Gilpin, C ;
Nikkel, S ;
Gilchrist, D ;
Hughes, R ;
Jackson, CE ;
Monaghan, KG ;
Oliveira, MJ ;
Seruca, R ;
Gallinger, S ;
Caldas, C ;
Huntsman, D .
JOURNAL OF MEDICAL GENETICS, 2004, 41 (07) :508-517
[10]   Predicting the Functional Effect of Amino Acid Substitutions and Indels [J].
Choi, Yongwook ;
Sims, Gregory E. ;
Murphy, Sean ;
Miller, Jason R. ;
Chan, Agnes P. .
PLOS ONE, 2012, 7 (10)