Molecular Mechanisms Modulating Glutamate Kinase Activity. Identification of the Proline Feedback Inhibitor Binding Site

被引:27
作者
Perez-Arellano, Isabel [1 ,2 ]
Carmona-Alvarez, Francisco [1 ]
Gallego, Jose [3 ]
Cervera, Javier [1 ,2 ]
机构
[1] Ctr Invest Principe Felipe, Valencia 46012, Spain
[2] Inst Salud Carlos III, Ctr Invest Biomed Red Enfermedades Raras, Valencia 46010, Spain
[3] Univ Catolica Valencia, Inst Invest Vina Giner, Valencia 46001, Spain
关键词
docking; enzyme inhibition; glutamate kinase; pyrroline-5-carboxylate; synthase; proline; EUBACTERIUM THERMUS-THERMOPHILUS; ESCHERICHIA-COLI; DELTA(1)-PYRROLINE-5-CARBOXYLATE SYNTHETASE; SACCHAROMYCES-CEREVISIAE; BIFUNCTIONAL ENZYME; TRANSFERASE KINASE; SALMONELLA-TYPHIMURIUM; ENHANCED OSMOTOLERANCE; ARGININE-BIOSYNTHESIS; OSMOTIC TOLERANCE;
D O I
10.1016/j.jmb.2010.10.019
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Proline, the feedback inhibitor of bacterial glutamate kinase (GK) and plant pyrroline-5-carboxylate synthase (P5CS) enzymes, is a key regulator of the osmotic and redox balance of cells Using kinetic assays, site-directed mutagenesis, structure activity analyses, and docking calculations, we have identified the binding site of this metabolite in three-dimensional structures of Escherichia cob and Campylobacter jejuni GKs The proline-binding cavity partially overlaps with the glutamate substrate site, and the interaction of both proline and glutamate with GK is modulated by a flexible, 16-residue loop linking beta-sheet 4 and alpha-helix E in the active-center cavity This loop is also critical for regulation of plant and human P5CSs Furthermore, our results indicate that the functional unit of the E colt enzyme is dimeric and contains an intermolecular hydrogen-bond network that interconnects the active-center cavities of the monomers and is important for substrate binding (C) 2010 Elsevier Ltd All rights reserved
引用
收藏
页码:890 / 901
页数:12
相关论文
共 53 条
[1]  
Bergmeyer H.U., 1986, Methods of Enzymatic Analysis
[2]  
BRADFORD MM, 1976, ANAL BIOCHEM, V72, P248, DOI 10.1016/0003-2697(76)90527-3
[3]   Structure of Escherichia coli UMP kinase differs from that of other nucleoside monophosphate kinases and sheds new light on enzyme regulation [J].
Briozzo, P ;
Evrin, C ;
Meyer, P ;
Assairi, L ;
Joly, N ;
Barzu, O ;
Gilles, AM .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2005, 280 (27) :25533-25540
[4]   The Amber biomolecular simulation programs [J].
Case, DA ;
Cheatham, TE ;
Darden, T ;
Gohlke, H ;
Luo, R ;
Merz, KM ;
Onufriev, A ;
Simmerling, C ;
Wang, B ;
Woods, RJ .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2005, 26 (16) :1668-1688
[5]   Directed evolution of an artificial bifunctional enzyme, γ-glutamyl kinase/γ-glutamyl phosphate reductase, for improved osmotic tolerance of Escherichia coli transformants [J].
Chen, Mingqing ;
Cao, Junwei ;
Zheng, Congyi ;
Liu, Qing .
FEMS MICROBIOLOGY LETTERS, 2006, 263 (01) :41-47
[6]  
Chen MQ, 2007, J BIOCHEM MOL BIOL, V40, P396
[7]   NUCLEOTIDE-SEQUENCE OF A MUTATION IN THE PROB GENE OF ESCHERICHIA-COLI THAT CONFERS PROLINE OVERPRODUCTION AND ENHANCED TOLERANCE TO OSMOTIC-STRESS [J].
CSONKA, LN ;
GELVIN, SB ;
GOODNER, BW ;
ORSER, CS ;
SIEMIENIAK, D ;
SLIGHTOM, JL .
GENE, 1988, 64 (02) :199-205
[8]   PROLINE OVER-PRODUCTION RESULTS IN ENHANCED OSMOTOLERANCE IN SALMONELLA-TYPHIMURIUM [J].
CSONKA, LN .
MOLECULAR & GENERAL GENETICS, 1981, 182 (01) :82-86
[9]   The R.ED. tools: advances in RESP and ESP charge derivation and force field library building [J].
Dupradeau, Francois-Yves ;
Pigache, Adrien ;
Zaffran, Thomas ;
Savineau, Corentin ;
Lelong, Rodolphe ;
Grivel, Nicolas ;
Lelong, Dimitri ;
Rosanski, Wilfried ;
Cieplak, Piotr .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2010, 12 (28) :7821-7839
[10]   Arginine biosynthesis in Thermotoga maritima:: Characterization of the arginine-sensitive N-acetyl-L-glutamate kinase [J].
Fernández-Murga, ML ;
Gil-Ortiz, F ;
Llácer, JL ;
Rubio, V .
JOURNAL OF BACTERIOLOGY, 2004, 186 (18) :6142-6149