Computer-Aided Drug Design of β-Secretase, γ-Secretase and Anti-Tau Inhibitors for the Discovery of Novel Alzheimer's Therapeutics

被引:47
作者
Mouchlis, Varnavas D. [1 ]
Melagraki, Georgia [2 ]
Zacharia, Lefteris C. [3 ]
Afantitis, Antreas [1 ]
机构
[1] NovaMechanics Ltd, Dept ChemoInformat, CY-1046 Nicosia, Cyprus
[2] Hellen Mil Acad, Div Phys Sci & Applicat, Vari 16672, Greece
[3] Univ Nicosia, Dept Life & Hlth Sci, CY-1700 Nicosia, Cyprus
关键词
Alzheimer's disease; computer-aided drug design; beta-secretase; gamma-secretase; Tau; computational structure-based design; molecular docking; molecular dynamics; computational ligand-based design; QSAR; cheminformatics; MICROTUBULE-ASSOCIATED PROTEIN; AMYLOID PRECURSOR PROTEIN; ACTIVE-SITE; POTENT INHIBITORS; BACE1; INHIBITOR; AGGREGATION INHIBITORS; MOLECULAR DOCKING; BINDING POCKET; DISEASE; PHOSPHORYLATION;
D O I
10.3390/ijms21030703
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Aging-associated neurodegenerative diseases, which are characterized by progressive neuronal death and synapses loss in human brain, are rapidly growing affecting millions of people globally. Alzheimer's is the most common neurodegenerative disease and it can be caused by genetic and environmental risk factors. This review describes the amyloid-beta and Tau hypotheses leading to amyloid plaques and neurofibrillary tangles, respectively which are the predominant pathways for the development of anti-Alzheimer's small molecule inhibitors. The function and structure of the druggable targets of these two pathways including beta-secretase, gamma-secretase, and Tau are discussed in this review article. Computer-Aided Drug Design including computational structure-based design and ligand-based design have been employed successfully to develop inhibitors for biomolecular targets involved in Alzheimer's. The application of computational molecular modeling for the discovery of small molecule inhibitors and modulators for beta-secretase and gamma-secretase is summarized. Examples of computational approaches employed for the development of anti-amyloid aggregation and anti-Tau phosphorylation, proteolysis and aggregation inhibitors are also reported.
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页数:25
相关论文
共 186 条
[31]   From Fragment Screening to In Vivo Efficacy: Optimization of a Series of 2-Aminoquinolines as Potent Inhibitors of Beta-Site Amyloid Precursor Protein Cleaving Enzyme 1 (BACE1) [J].
Cheng, Yuan ;
Judd, Ted C. ;
Bartberger, Michael D. ;
Brown, James ;
Chen, Kui ;
Fremeau, Robert T., Jr. ;
Hickman, Dean ;
Hitchcock, Stephen A. ;
Jordan, Brad ;
Li, Vivian ;
Lopez, Patricia ;
Louie, Steven W. ;
Luo, Yi ;
Michelsen, Klaus ;
Nixey, Thomas ;
Powers, Timothy S. ;
Rattan, Claire ;
Sickmier, E. Allen ;
St Jean, David J. ;
Wahl, Robert C. ;
Wen, Paul H. ;
Wood, Stephen .
JOURNAL OF MEDICINAL CHEMISTRY, 2011, 54 (16) :5836-5857
[32]   Application of Free Energy Perturbation for the Design of BACE1 Inhibitors [J].
Ciordia, Myriam ;
Perez-Benito, Laura ;
Delgado, Francisca ;
Trabanco, Andres A. ;
Tresadern, Gary .
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2016, 56 (09) :1856-1871
[33]   PURIFICATION OF TAU, A MICROTUBULE-ASSOCIATED PROTEIN THAT INDUCES ASSEMBLY OF MICROTUBULES FROM PURIFIED TUBULIN [J].
CLEVELAND, DW ;
HWO, SY ;
KIRSCHNER, MW .
JOURNAL OF MOLECULAR BIOLOGY, 1977, 116 (02) :207-225
[34]   PHYSICAL AND CHEMICAL PROPERTIES OF PURIFIED TAU FACTOR AND ROLE OF TAU IN MICROTUBULE ASSEMBLY [J].
CLEVELAND, DW ;
HWO, SY ;
KIRSCHNER, MW .
JOURNAL OF MOLECULAR BIOLOGY, 1977, 116 (02) :227-247
[35]   The acetylation of tau inhibits its function and promotes pathological tau aggregation [J].
Cohen, Todd J. ;
Guo, Jing L. ;
Hurtado, David E. ;
Kwong, Linda K. ;
Mills, Ian P. ;
Trojanowski, John Q. ;
Lee, Virginia M. Y. .
NATURE COMMUNICATIONS, 2011, 2
[36]   Tau-targeting therapies for Alzheimer disease [J].
Congdon, Erin E. ;
Sigurdsson, Einar M. .
NATURE REVIEWS NEUROLOGY, 2018, 14 (07) :399-415
[37]   Acetylation of the KXGS motifs in tau is a critical determinant in modulation of tau aggregation and clearance [J].
Cook, Casey ;
Carlomagno, Yari ;
Gendron, Tania F. ;
Dunmore, Judy ;
Scheffel, Kristyn ;
Stetler, Caroline ;
Davis, Mary ;
Dickson, Dennis ;
Jarpe, Matthew ;
DeTure, Michael ;
Petrucelli, Leonard .
HUMAN MOLECULAR GENETICS, 2014, 23 (01) :104-116
[38]   Alzheimer's disease drug development pipeline: 2019 [J].
Cummings, Jeffrey ;
Lee, Garam ;
Ritter, Aaron ;
Sabbagh, Marwan ;
Zhong, Kate .
ALZHEIMERS & DEMENTIA-TRANSLATIONAL RESEARCH & CLINICAL INTERVENTIONS, 2019, 5 (01) :272-293
[39]  
Cummings Jeffrey, 2016, Alzheimers Dement (N Y), V2, P222, DOI 10.1016/j.trci.2016.07.001
[40]   Designed helical peptides inhibit an intramembrane protease [J].
Das, C ;
Berezovska, O ;
Diehl, TS ;
Genet, C ;
Buldyrev, I ;
Tsai, JY ;
Hyman, BT ;
Wolfe, MS .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2003, 125 (39) :11794-11795