Complete mitochondrial genome of Odontobutis haifengensis (Perciformes, Odontobutiae): A unique rearrangement of tRNAs and additional non-coding regions identified in the genus Odontobutis

被引:21
作者
Zhong, Liqiang [1 ]
Wang, Minghua [1 ]
Li, Daming [1 ]
Tang, Shengkai [1 ]
Zhang, Tongqing [1 ]
Bian, Wenji [1 ]
Chen, Xiaohui [1 ]
机构
[1] Freshwater Fisheries Res Inst Jiangsu Prov, Nanjing 210017, Jiangsu, Peoples R China
关键词
Odontobutis haifengensis; Mitochondrial genome; Gene rearrangement; Phylogenetic analysis; FRESH-WATER GOBY; HIGHER TELEOSTEAN PHYLOGENIES; AUTOMATIC ANNOTATION; DNA; SEQUENCE; ORGANIZATION; REPLICATION; EXPLORATION; EVOLUTION; PATTERNS;
D O I
10.1016/j.ygeno.2017.12.008
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Herein, the complete mitochondrial genome of Odontobutis haifengensis was sequenced for the first time. The 0. haifengensis mitogenome was 17,016 bp in length and included 13 protein-coding genes, 22 transfer RNAs (tRNAs), 2 ribosomal RNAs (rRNAs), and a control region (CR). The genome organization, base composition, codon usage, and gene rearrangement was similar to other Odontobutis species. Furthermore, a tRNA gene rearrangement within the SLH cluster was found to be identical to other Odontobutis species. Moreover, the gene order and the positions of additional intergenic non-coding regions suggests that the observed unique gene rearrangement resulted from a tandem duplication and random loss of large-scale gene regions. Additionally, phylogenetic analysis showed that Odontobutis species form a monophyletic Glade due to the conserved mitochondrial gene rearrangement. This study provides useful information that aids in a better understanding of mitogenomic diversity and evolutionary patterns of Odontobutidae species.
引用
收藏
页码:382 / 388
页数:7
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