Effects of base substitutions in RNA from molecular dynamics and free energy Simulations

被引:0
|
作者
Kuliñski, T
Sarzyñska, J
Kuliñska, K
Nilsson, L
机构
[1] Polish Acad Sci, PL-61704 Poznan, Poland
[2] Karolinska Inst, SE-14157 Huddinge, Sweden
关键词
D O I
暂无
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
引用
收藏
页码:179A / 179A
页数:1
相关论文
共 50 条
  • [21] Phosphorothioate Substitutions in RNA Structure Studied by Molecular Dynamics Simulations, QM/MM Calculations, and NMR Experiments
    Zhang, Zhengyue
    Vogele, Jennifer
    Mrazikova, Klaudia
    Kruse, Holger
    Cang, Xiaohui
    Woehnert, Jens
    Krepl, Miroslav
    Sponer, Jiri
    JOURNAL OF PHYSICAL CHEMISTRY B, 2021, 125 (03): : 825 - 840
  • [22] Predicting RNA Duplex Dimerization Free-Energy Changes upon Mutations Using Molecular Dynamics Simulations
    Sakuraba, Shun
    Asai, Kiyoshi
    Kameda, Tomoshi
    JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2015, 6 (21): : 4348 - 4351
  • [23] Protocol for calculating binding free energy of RNA:RNA interactions through molecular dynamics simulations using adaptive biasing force technique
    Kameda, Takeru
    Saha, Daniel K.
    Ray, Sourav
    Togashi, Yuichi
    Asano, Katsura
    STAR PROTOCOLS, 2024, 5 (03):
  • [24] Computational studies on pseudorotaxanes by molecular dynamics and free energy perturbation simulations
    Grabuleda, X
    Ivanov, P
    Jaime, C
    JOURNAL OF ORGANIC CHEMISTRY, 2003, 68 (04): : 1539 - 1547
  • [25] Polar interactions of chondroitinsulfate - Surface free energy and molecular dynamics simulations
    Wiegel, D
    Kaufmann, J
    Arnold, K
    COLLOIDS AND SURFACES B-BIOINTERFACES, 1999, 13 (03) : 143 - 156
  • [26] Overcoming free energy barriers using unconstrained molecular dynamics simulations
    Hénin, J
    Chipot, C
    JOURNAL OF CHEMICAL PHYSICS, 2004, 121 (07): : 2904 - 2914
  • [27] Improved Reweighting of Accelerated Molecular Dynamics Simulations for Free Energy Calculation
    Miao, Yinglong
    Sinko, William
    Pierce, Levi
    Bucher, Denis
    Walker, Ross C.
    McCammon, J. Andrew
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2014, 10 (07) : 2677 - 2689
  • [28] Folding free-energy landscape of villin headpiece subdomain from molecular dynamics simulations
    Lei, Hongxing
    Wu, Chun
    Liu, Haiguang
    Duan, Yong
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (12) : 4925 - 4930
  • [29] Free energy calculation from steered molecular dynamics simulations using Jarzynski's equality
    Park, S
    Khalili-Araghi, F
    Tajkhorshid, E
    Schulten, K
    JOURNAL OF CHEMICAL PHYSICS, 2003, 119 (06): : 3559 - 3566
  • [30] Free energy calculation from steered molecular dynamics simulations using Jarzynski's equality
    Beckman Institute, Univ. of Illinois Urbana-Champaign, Urbana, IL 61801, United States
    不详
    J Chem Phys, 1600, 6 (3559-3566):