Surveys of non-ribosomal peptide and polyketide assembly lines in fungi and prospects for their analysis in vitro and in vivo

被引:33
作者
Evans, Bradley S. [2 ,3 ]
Robinson, Sarah J. [4 ]
Kelleher, Neil L. [1 ,3 ]
机构
[1] Univ Illinois, Dept Chem, Urbana, IL 61801 USA
[2] Univ Illinois, Dept Biochem, Urbana, IL 61801 USA
[3] Univ Illinois, Inst Genom Biol, Urbana, IL 61801 USA
[4] Northwestern Univ, Dept Chem, Evanston, IL 60208 USA
基金
美国国家卫生研究院;
关键词
Fungal metabolism; Non-ribosomal peptide synthetases; Polyketide synthases; Thiotemplate biosynthesis; Secondary metabolism; Proteomics; Mass spectrometry; Fourier-Transform mass spectrometry; ASPERGILLUS-NIDULANS; BIOSYNTHETIC-PATHWAY; ENNIATIN SYNTHETASE; CARRIER DOMAINS; HETEROLOGOUS EXPRESSION; ADENYLATION DOMAINS; MASS-SPECTROMETRY; NATURAL-PRODUCTS; VIRULENCE FACTOR; GENE-CLUSTER;
D O I
10.1016/j.fgb.2010.06.012
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
With many bioactive non-ribosomal peptides and polyketides produced in fungi, studies of their biosyntheses are an active area of research. Practical limitations of working with mega-dalton synthetases including cell lysis and protein extraction to recombinant gene and pathway expression has slowed understanding of many secondary metabolic processes relative to bacterial counterparts. Recent advances in accessing fungal biosynthetic machinery are beginning to change this. Here we describe the successes of some studies of thiotemplate biosynthesis in fungal systems, along with very recent advances in chemical tagging and mass spectrometric strategies to selectively study biosynthetic conveyer belts in isolation, and within a few years, in endogenous fungal proteomes. (C) 2010 Elsevier Inc. All rights reserved.
引用
收藏
页码:49 / 61
页数:13
相关论文
共 89 条
[1]   PENICILLIN AND CEPHALOSPORIN BIOSYNTHETIC GENES - STRUCTURE, ORGANIZATION, REGULATION, AND EVOLUTION [J].
AHARONOWITZ, Y ;
COHEN, G ;
MARTIN, JF .
ANNUAL REVIEW OF MICROBIOLOGY, 1992, 46 :461-495
[2]   Two polyketide synthase-encoding genes are required for biosynthesis of the polyketide virulence factor, T-toxin, by Cochliobolus heterostrophus [J].
Baker, SE ;
Kroken, S ;
Inderbitzin, P ;
Asvarak, T ;
Li, BY ;
Shi, L ;
Yoder, OC ;
Turgeon, BG .
MOLECULAR PLANT-MICROBE INTERACTIONS, 2006, 19 (02) :139-149
[3]   Terrequinone A biosynthesis through L-tryptophan oxidation, dimerization and bisprenylation [J].
Balibar, Carl J. ;
Howard-Jones, Annaleise R. ;
Walsh, Christopher T. .
NATURE CHEMICAL BIOLOGY, 2007, 3 (09) :584-592
[4]   Mycotoxins [J].
Bennett, JW ;
Klich, M .
CLINICAL MICROBIOLOGY REVIEWS, 2003, 16 (03) :497-+
[5]   Genomics-driven discovery of PKS-NRPS hybrid metabolites from Aspergillus nidulans [J].
Bergmann, Sebastian ;
Schuemann, Julia ;
Scherlach, Kirstin ;
Lange, Corinna ;
Brakhage, Axel A. ;
Hertweck, Christian .
NATURE CHEMICAL BIOLOGY, 2007, 3 (04) :213-217
[6]   Biosynthesis of dothistromin [J].
Bradshaw, Rosie E. ;
Zhang, Shuguang .
MYCOPATHOLOGIA, 2006, 162 (03) :201-213
[7]   A proteomics approach to discovering natural products and their biosynthetic pathways [J].
Bumpus, Stefanie B. ;
Evans, Bradley S. ;
Thomas, Paul M. ;
Ntai, Ioanna ;
Kelleher, Neil L. .
NATURE BIOTECHNOLOGY, 2009, 27 (10) :951-U120
[8]   A ketoreductase domain in the PksJ protein of the bacillaene assembly line carries out both α- and β-ketone reduction during chain growth [J].
Calderone, Christopher T. ;
Bumpus, Stefanie B. ;
Kelleher, Neil L. ;
Walsh, Christopher T. ;
Magarvey, Nathan A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (35) :12809-12814
[9]   Biochemistry - Harnessing the biosynthetic code: Combinations, permutations, and mutations [J].
Cane, DE ;
Walsh, CT ;
Khosla, C .
SCIENCE, 1998, 282 (5386) :63-68
[10]   Compactin - a review [J].
Chakravarti, R ;
Sahai, V .
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2004, 64 (05) :618-624