Intermittent search strategies

被引:565
作者
Benichou, O. [1 ]
Loverdo, C. [1 ]
Moreau, M. [1 ]
Voituriez, R. [1 ]
机构
[1] Univ Paris 06, UPMC, Lab Phys Theor Mat Condensee, UMR 7600, F-75005 Paris, France
关键词
REPRESSOR-OPERATOR INTERACTION; DIFFUSION-DRIVEN MECHANISMS; LAC REPRESSOR; PROTEIN TRANSLOCATION; ANOMALOUS DIFFUSION; NUCLEIC-ACIDS; FACILITATED DIFFUSION; ASSOCIATION KINETICS; ENHANCED DIFFUSION; RANDOM-WALKS;
D O I
10.1103/RevModPhys.83.81
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
This review examines intermittent target search strategies, which combine phases of slow motion, allowing the searcher to detect the target, and phases of fast motion during which targets cannot be detected. It is first shown that intermittent search strategies are actually widely observed at various scales. At the macroscopic scale, this is, for example, the case of animals looking for food; at the microscopic scale, intermittent transport patterns are involved in a reaction pathway of DNA-binding proteins as well as in intracellular transport. Second, generic stochastic models are introduced, which show that intermittent strategies are efficient strategies that enable the minimization of search time. This suggests that the intrinsic efficiency of intermittent search strategies could justify their frequent observation in nature. Last, beyond these modeling aspects, it is proposed that intermittent strategies could also be used in a broader context to design and accelerate search processes.
引用
收藏
页码:81 / 129
页数:49
相关论文
共 179 条
  • [61] Crowding effects on diffusion in solutions and cells
    Dix, James A.
    Verkman, A. S.
    [J]. ANNUAL REVIEW OF BIOPHYSICS, 2008, 37 : 247 - 263
  • [62] A SURVEY OF SEARCH THEORY
    DOBBIE, JM
    [J]. OPERATIONS RESEARCH, 1968, 16 (03) : 525 - &
  • [63] Amplification of individual preferences in a social context:: the case of wall-following in ants
    Dussutour, A
    Deneubourg, JL
    Fourcassié, V
    [J]. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2005, 272 (1564) : 705 - 714
  • [64] Revisiting Levy flight search patterns of wandering albatrosses, bumblebees and deer
    Edwards, Andrew M.
    Phillips, Richard A.
    Watkins, Nicholas W.
    Freeman, Mervyn P.
    Murphy, Eugene J.
    Afanasyev, Vsevolod
    Buldyrev, Sergey V.
    da Luz, M. G. E.
    Raposo, E. P.
    Stanley, H. Eugene
    Viswanathan, Gandhimohan M.
    [J]. NATURE, 2007, 449 (7165) : 1044 - U5
  • [65] Probing transcription factor dynamics at the single-molecule level in a living cell
    Elf, Johan
    Li, Gene-Wei
    Xie, X. Sunney
    [J]. SCIENCE, 2007, 316 (5828) : 1191 - 1194
  • [66] Parallel search of long circular strands: Modeling, analysis, and optimization
    Eliazar, Iddo
    Koren, Tal
    Klafter, Joseph
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2008, 112 (19) : 5905 - 5909
  • [67] Searching circular DNA strands
    Eliazar, Iddo
    Koren, Tal
    Klafter, Joseph
    [J]. JOURNAL OF PHYSICS-CONDENSED MATTER, 2007, 19 (06)
  • [68] Dispersal time for ancient human migrations: Americas and Europe colonization
    Flores, J. C.
    [J]. EPL, 2007, 79 (01)
  • [69] Description of nonspecific DNA-protein interaction and facilitated diffusion with a dynamical model
    Florescu, Ana-Maria
    Joyeux, Marc
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2009, 130 (01)
  • [70] Regulation of body size and behavioral state of C-elegans by sensory perception and the EGL-4 cGMP-dependent protein kinase
    Fujiwara, M
    Sengupta, P
    McIntire, SL
    [J]. NEURON, 2002, 36 (06) : 1091 - 1102