Using functional genomics approaches in identifying molecular determinants of coffee quality. A review

被引:6
作者
Joet, Thierry [2 ]
Pot, David [1 ]
Ferreira, Lucia Pires [3 ,4 ]
Dussert, Stephane [2 ]
Marraccini, Pierre [1 ,5 ]
机构
[1] Cirad, UMR AGAP, F-34398 Montpellier, France
[2] IRD, UMR Diade, F-34394 Montpellier, France
[3] LBI AMG, IAPAR, BR-86001970 Londrina, PR, Brazil
[4] Ctr Recursos Genet Vegetais, IAC, BR-13075630 Campinas, SP, Brazil
[5] EMBRAPA, Genet Resources & Biotechnol, BR-70770900 Brasilia, DF, Brazil
关键词
biochemical pathways; coffea; gene expression; grain filling; CHLOROGENIC ACID; ARABICA L; GENE-EXPRESSION; N-METHYLTRANSFERASES; BIOSYNTHETIC-PATHWAY; FRUIT-DEVELOPMENT; SEED DEVELOPMENT; CANEPHORA; METABOLISM; PLANTS;
D O I
10.1684/agr.2012.0548
中图分类号
S [农业科学];
学科分类号
09 ;
摘要
Using functional genomics approaches in identifying molecular determinants of coffee quality. A review The coffee seed contains all the necessary precursors to generate the full complement of coffee aromas and flavours. Coffee seed reserves are composed mainly of cell wall polysaccharides, lipids; proteins, sucrose and secondary metabolites including chlorogenic acids, caffeine and trigonelline. Because all of these compounds are involved in the complex chemistry of coffee roasting, understanding coffee quality ultimately requires a detailed characterization of the metabolic pathways dedicated to the synthesis of these aroma/flavour precursors which includes the transcriptional regulation for the genes encoding the relevant enzymes. This review focuses on the latest advances regarding functional genomics and its use in deciphering metabolic pathways that occur during coffee seed development.
引用
收藏
页码:125 / 133
页数:9
相关论文
共 39 条
  • [21] Leroy Thierry, 2006, Braz. J. Plant Physiol., V18, P229, DOI 10.1590/S1677-04202006000100016
  • [22] Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts
    Lin, CW
    Mueller, LA
    Mc Carthy, J
    Crouzillat, D
    Pétiard, V
    Tanksley, SD
    [J]. THEORETICAL AND APPLIED GENETICS, 2005, 112 (01) : 114 - 130
  • [23] Altered expression of the caffeine synthase gene in a naturally caffeine-free mutant of Coffea arabica
    Maluf, Mirian Perez
    da Silva, Carla Cristina
    Abreu de Oliveira, Michelle de Paula
    Tavares, Aline Gomes
    Silvarolla, Maria Bernadete
    Guerreiro Filho, Oliveiro
    [J]. GENETICS AND MOLECULAR BIOLOGY, 2009, 32 (04) : 802 - 810
  • [24] The structure of two N-methyltransferases from the caffeine biosynthetic pathway
    McCarthy, Andrew A.
    McCarthy, James G.
    [J]. PLANT PHYSIOLOGY, 2007, 144 (02) : 879 - 889
  • [25] An EST-based analysis identifies new genes and reveals distinctive gene expression features of Coffea arabica and Coffea canephora
    Mondego, Jorge M. C.
    Vidal, Ramon O.
    Carazzolle, Marcelo F.
    Tokuda, Eric K.
    Parizzi, Lucas P.
    Costa, Gustavo G. L.
    Pereira, Luiz F. P.
    Andrade, Alan C.
    Colombo, Carlos A.
    Vieira, Luiz G. E.
    Pereira, Goncalo A. G.
    [J]. BMC PLANT BIOLOGY, 2011, 11
  • [26] 7-Methylxanthine methyltransferase of coffee plants - Gene isolation and enzymatic properties
    Ogawa, M
    Herai, Y
    Koizumi, N
    Kusano, T
    Sano, H
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (11) : 8213 - 8218
  • [27] RNA interference - Producing decaffeinated coffee plants
    Ogita, S
    Uefuji, H
    Yamaguchi, Y
    Koizumi, N
    Sano, H
    [J]. NATURE, 2003, 423 (6942) : 823 - 823
  • [28] SSR mining in coffee tree EST databases:: potential use of EST-SSRs as markers for the Coffea genus
    Poncet, Valerie
    Rondeau, Myriam
    Tranchant, Christine
    Cayrel, Anne
    Hamon, Serge
    de Kochko, Alexandre
    Hamon, Perla
    [J]. MOLECULAR GENETICS AND GENOMICS, 2006, 276 (05) : 436 - 449
  • [29] Differential regulation of grain sucrose accumulation and metabolism in Coffea arabica (Arabica) and Coffea canephora (Robusta) revealed through gene expression and enzyme activity analysis
    Privat, Isabelle
    Foucrier, Severine
    Prins, Anneke
    Epalle, Thibaut
    Eychenne, Magali
    Kandalaft, Laurianne
    Caillet, Victoria
    Lin, Chenwei
    Tanksley, Steve
    Foyer, Christine
    McCarthy, James
    [J]. NEW PHYTOLOGIST, 2008, 178 (04) : 781 - 797
  • [30] The 'PUCE CAFE' Project: the First 15K Coffee Microarray, a New Tool for Discovering Candidate Genes correlated to Agronomic and Quality Traits
    Privat, Isabelle
    Bardil, Amelie
    Gomez, Aureliano Bombarely
    Severac, Dany
    Dantec, Christelle
    Fuentes, Ivanna
    Mueller, Lukas
    Joet, Thierry
    Pot, David
    Foucrier, Severine
    Dussert, Stephane
    Leroy, Thierry
    Journot, Laurent
    de Kochko, Alexandre
    Campa, Claudine
    Combes, Marie-Christine
    Lashermes, Philippe
    Bertrand, Benoit
    [J]. BMC GENOMICS, 2011, 12