Complete Genome Sequences of Two Nosocomiicoccus ampullae Strains and a Growth-Adapted Mutant

被引:1
作者
Schuster, Christopher F. [1 ,3 ]
Sommer, Frank [2 ]
Strommenger, Birgit [1 ]
Werner, Guido [1 ]
Layer, Franziska [1 ]
机构
[1] Robert Koch Inst, Div Nosocomial Pathogens & Antibiot Resistance, Wernigerode, Germany
[2] Univ Klinikum Giessen & Marburg GmbH, Inst Med Mikrobiol & Krankenhaushyg, Marburg, Germany
[3] ZEPAI Kerner Pandem Vaccines & Therapeut, Langen, Germany
来源
MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2021年 / 10卷 / 50期
关键词
GEN; NOV;
D O I
10.1128/MRA.00747-21
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Here, we present the circular and complete genome sequences of the Nosocomiicoccus ampullae isolate 19-00310 and type strain DSM 19163. To our knowledge, these represent the first complete, circular chromosomes in the entire genus. Sequencing of a growth-adapted mutant suggests iron availability as a factor for growth improvement.
引用
收藏
页数:5
相关论文
共 12 条
  • [1] Nosocomiicoccus ampullae gen. nov., sp nov., isolated from the surface of bottles of saline solution used in wound cleansing
    Alves, Marta
    Nogueira, Celia
    de Magalhaes-Sant'Ana, Augusto
    Chung, Ana Paula
    Morais, Paula V.
    da Costa, Milton S.
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2008, 58 : 2939 - 2944
  • [2] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
    Bankevich, Anton
    Nurk, Sergey
    Antipov, Dmitry
    Gurevich, Alexey A.
    Dvorkin, Mikhail
    Kulikov, Alexander S.
    Lesin, Valery M.
    Nikolenko, Sergey I.
    Son Pham
    Prjibelski, Andrey D.
    Pyshkin, Alexey V.
    Sirotkin, Alexander V.
    Vyahhi, Nikolay
    Tesler, Glenn
    Alekseyev, Max A.
    Pevzner, Pavel A.
    [J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) : 455 - 477
  • [3] Trimmomatic: a flexible trimmer for Illumina sequence data
    Bolger, Anthony M.
    Lohse, Marc
    Usadel, Bjoern
    [J]. BIOINFORMATICS, 2014, 30 (15) : 2114 - 2120
  • [4] NanoPack: visualizing and processing long-read sequencing data
    De Coster, Wouter
    D'Hert, Svenn
    Schultz, Darrin T.
    Cruts, Marc
    Van Broeckhoven, Christine
    [J]. BIOINFORMATICS, 2018, 34 (15) : 2666 - 2669
  • [5] Draft Genome Sequence for a Urinary Isolate of Nosocomiicoccus ampullae
    Hilt, Evann E.
    Price, Travis K.
    Diebel, Katherine
    Putonti, Catherine
    Wolfe, Alan J.
    [J]. GENOME ANNOUNCEMENTS, 2016, 4 (06)
  • [6] High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
    Jain, Chirag
    Rodriguez-R, Luis M.
    Phillippy, Adam M.
    Konstantinidis, Konstantinos T.
    Aluru, Srinivas
    [J]. NATURE COMMUNICATIONS, 2018, 9
  • [7] Phylogenomic analyses of the Staphylococcaceae family suggest the reclassification of five species within the genus Staphylococcus as heterotypic synonyms, the promotion of five subspecies to novel species, the taxonomic reassignment of five Staphylococcus species to Mammaliicoccus gen. nov., and the formal assignment of Nosocomiicoccus to the family Staphylococcaceae
    Madhaiyan, Munusamy
    Wirth, Joseph S.
    Saravanan, Venkatakrishnan Sivaraj
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2020, 70 (11) : 5926 - 5936
  • [8] Non-contiguous finished genome sequence and description of Nosocomiicoccus massiliensis sp nov.
    Mishra, Ajay Kumar
    Edouard, Sophie
    Dangui, Nicole Prisca Makaya
    Lagier, Jean-Christophe
    Caputo, Aurelia
    Blanc-Tailleur, Caroline
    Ravaux, Isabelle
    Raoult, Didier
    Fournier, Pierre-Edouard
    [J]. STANDARDS IN GENOMIC SCIENCES, 2013, 9 (01): : 205 - 219
  • [9] Seemann T., 2015, Snippy: Fast bacterial variant calling from NGS reads
  • [10] Easyfig: a genome comparison visualizer
    Sullivan, Mitchell J.
    Petty, Nicola K.
    Beatson, Scott A.
    [J]. BIOINFORMATICS, 2011, 27 (07) : 1009 - 1010