TEXtopo:: shaded membrane protein topology plots in LATEX2ε

被引：62

作者：

Beitz, E ^{[1
]}

机构：

[1] Univ Tubingen, Fac Chem & Pharm, D-72076 Tubingen, Germany

来源：

BIOINFORMATICS | 2000年 / 16卷 / 11期

关键词：

D O I：

10.1093/bioinformatics/16.11.1050

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

T(E)Xtopo is a LAT(E)X2(epsilon) macro package for plotting topology data directly from PHD predictions or SwissProt database Jibes in publication-ready quality. The plot can be shaded automatically to emphasize conserved residues or functional properties of the residue sidechains. The addition of rich decorations, such as labels, annotations and legends, is easily accomplished.

引用

页码：1050 / 1051

页数：2

共 6 条

[1] The SWISS-PROT protein sequence data bank and its supplement TrEMBL [J].

Bairoch, A ;

Apweller, R .

NUCLEIC ACIDS RESEARCH, 1997, 25 (01) :31-36

[2] TEXshade:: shading and labeling of multiple sequence alignments using LATEX 2ε [J].

Beitz, E .

BIOINFORMATICS, 2000, 16 (02) :135-139

[3] Visualisation and integration of G protein-coupled receptor related information help the modelling: Description and applications of the Viseur program [J].

Campagne, F ;

Jestin, R ;

Reversat, JL ;

Bernassau, JM ;

Maigret, B .

JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 1999, 13 (06) :625-643

[4] Schematic representation of residue-based protein context-dependent data: An application to transmembrane proteins [J].

Campagne, F ;

Weinstein, H .

JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 1999, 17 (3-4) :207-213

[5] VHMPT: a graphical viewer and editor for helical membrane protein topologies [J].

Lin, WJ ;

Hwang, MJ .

BIOINFORMATICS, 1998, 14 (10) :866-868

[6]

Rost B, 1996, METHOD ENZYMOL, V266, P525

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