Brain waves analysis via a non-parametric Bayesian mixture of autoregressive kernels

被引:5
作者
Granados-Garcia, Guilllermo [1 ]
Fiecas, Mark [2 ]
Babak, Shahbaba [3 ]
Fortin, Norbert J. [3 ]
Ombao, Hernando [1 ]
机构
[1] King Abdullah Univ Sci & Technol KAUST, Thuwal, Saudi Arabia
[2] Univ Minnesota, Minneapolis, MN USA
[3] Univ Calif Irvine, Irvine, CA USA
关键词
Spectral density estimation; Bayesian nonparametrics; Local field potentials; Dirichlet process; Markov chain Monte Carlo; CHAIN-MONTE-CARLO; DENSITY-ESTIMATION; SPECTRAL DENSITY; APPROXIMATE DIRICHLET; TIME-SERIES; MODEL; COHERENCE; SEQUENCE;
D O I
10.1016/j.csda.2021.107409
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
The standard approach to analyzing brain electrical activity is to examine the spectral density function (SDF) and identify frequency bands, defined a priori, that have the most substantial relative contributions to the overall variance of the signal. However, a limitation of this approach is that the precise frequency and bandwidth of oscillations are not uniform across different cognitive demands. Thus, these bands should not be arbitrarily set in any analysis. To overcome this limitation, the Bayesian mixture auto-regressive decomposition (BMARD) method is proposed, as a data-driven approach that identifies (i) the number of prominent spectral peaks, (ii) the frequency peak locations, and (iii) their corresponding bandwidths (or spread of power around the peaks). Using the BMARD method, the standardized SDF is represented as a Dirichlet process mixture based on a kernel derived from second-order auto-regressive processes which completely characterize the location (peak) and scale (bandwidth) parameters. A Metropolis-Hastings within the Gibbs algorithm is developed for sampling the posterior distribution of the mixture parameters. Simulations demonstrate the robust performance of the proposed method. Finally, the BMARD method is applied to analyze local field potential (LFP) activity from the hippocampus of laboratory rats across different conditions in a non-spatial sequence memory experiment, to identify the most prominent frequency bands and examine the link between specific patterns of brain oscillatory activity and trial-specific cognitive demands.(c) 2021 Elsevier B.V. All rights reserved.
引用
收藏
页数:18
相关论文
共 63 条
[1]   Nonspatial Sequence Coding in CA1 Neurons [J].
Allen, Timothy A. ;
Salz, Daniel M. ;
McKenzie, Sam ;
Fortin, Norbert J. .
JOURNAL OF NEUROSCIENCE, 2016, 36 (05) :1547-1563
[2]   A Sequence of Events Model of Episodic Memory Shows Parallels in Rats and Humans [J].
Allen, Timothy A. ;
Morris, Andrea M. ;
Mattfeld, Aaron T. ;
Stark, Craig E. L. ;
Fortin, Norbert J. .
HIPPOCAMPUS, 2014, 24 (10) :1178-1188
[3]  
[Anonymous], 2014, Analysis of Neural Data
[4]  
[Anonymous], 2013, SEAMLESS R C INTEGRA, DOI DOI 10.1007/978-1-4614-6868-4
[5]   MIXTURES OF DIRICHLET PROCESSES WITH APPLICATIONS TO BAYESIAN NONPARAMETRIC PROBLEMS [J].
ANTONIAK, CE .
ANNALS OF STATISTICS, 1974, 2 (06) :1152-1174
[6]   Partial directed coherence:: a new concept in neural structure determination [J].
Baccalá, LA ;
Sameshima, K .
BIOLOGICAL CYBERNETICS, 2001, 84 (06) :463-474
[7]   Assessing a mixture model for clustering with the integrated completed likelihood [J].
Biernacki, C ;
Celeux, G ;
Govaert, G .
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2000, 22 (07) :719-725
[8]  
Brockwell P.J., 1987, Time series: Theory and Methods, DOI DOI 10.1007/978-1-4419-0320-4
[9]   Empirical Frequency Band Analysis of Nonstationary Time Series [J].
Bruce, Scott A. ;
Tang, Cheng Yong ;
Hall, Martica H. ;
Krafty, Robert T. .
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 2020, 115 (532) :1933-1945
[10]  
Buzsaki G., 2009, RHYTHMS BRAIN, pXIV