In Silico Studies of Some Isoflavonoids as Potential Candidates against COVID-19 Targeting Human ACE2 (hACE2) and Viral Main Protease (Mpro)

被引:52
作者
Alesawy, Mohamed S. [1 ]
Abdallah, Abdallah E. [1 ]
Taghour, Mohammed S. [1 ]
Elkaeed, Eslam B. [2 ,3 ]
H. Eissa, Ibrahim [1 ]
Metwaly, Ahmed M. [4 ]
机构
[1] Al Azhar Univ, Fac Pharm Boys, Med Pharmaceut Chem & Drug Design Dept, Cairo 11884, Egypt
[2] AlMaarefa Univ, Coll Pharm, Dept Pharmaceut Sci, Riyadh 13713, Saudi Arabia
[3] Al Azhar Univ, Fac Pharm Boys, Dept Organ Pharmaceut Chem, Cairo 11884, Egypt
[4] Al Azhar Univ, Fac Pharm Boys, Dept Pharmacognosy & Med Plants, Cairo 11884, Egypt
关键词
COVID-19; isoflavonoids; molecular docking; human ACE2; main protease; ANTI-HYPERGLYCEMIC EVALUATION; ALPHA-PYRONE DERIVATIVES; DRUG DISCOVERY; PPAR-GAMMA; DESIGN; EXPRESSION; INDUCTION; VIRUS; QSAR;
D O I
10.3390/molecules26092806
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) caused the "COVID-19" disease that has been declared by WHO as a global emergency. The pandemic, which emerged in China and widespread all over the world, has no specific treatment till now. The reported antiviral activities of isoflavonoids encouraged us to find out its in silico anti-SARS-CoV-2 activity. In this work, molecular docking studies were carried out to investigate the interaction of fifty-nine isoflavonoids against hACE2 and viral M-pro. Several other in silico studies including physicochemical properties, ADMET and toxicity have been preceded. The results revealed that the examined isoflavonoids bound perfectly the hACE-2 with free binding energies ranging from -24.02 to -39.33 kcal mol(-1), compared to the co-crystallized ligand (-21.39 kcal mol(-1)). Furthermore, such compounds bound the M-pro with unique binding modes showing free binding energies ranging from -32.19 to -50.79 kcal mol(-1), comparing to the co-crystallized ligand (binding energy = -62.84 kcal mol(-1)). Compounds 33 and 56 showed the most acceptable affinities against hACE2. Compounds 30 and 53 showed the best docking results against M-pro. In silico ADMET studies suggest that most compounds possess drug-likeness properties.
引用
收藏
页数:30
相关论文
共 55 条
[41]   Antiviral activity of substituted homoisoflavonoids on enteroviruses [J].
Tait, Sabrina ;
Salvati, Anna Laura ;
Desideri, Nicoletta ;
Fiore, Lucia .
ANTIVIRAL RESEARCH, 2006, 72 (03) :252-255
[42]   Structural insights into coronavirus entry [J].
Tortorici, M. Alejandra ;
Veesler, David .
COMPLEMENTARY STRATEGIES TO UNDERSTAND VIRUS STRUCTURE AND FUNCTION, 2019, 105 :93-116
[43]   Assessment of the oral rat chronic lowest observed adverse effect level model in TOPKAT, a QSAR software package for toxicity prediction [J].
Venkatapathy, R ;
Moudgal, CJ ;
Bruce, RM .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 2004, 44 (05) :1623-1629
[44]   Chemical Constituents of Stems and Leaves of Tagetespatula L. and Its Fingerprint [J].
Wang, Yu-Meng ;
Ran, Xiao-Ku ;
Riaz, Muhammad ;
Yu, Miao ;
Cai, Qian ;
Dou, De-Qiang ;
Metwaly, Ahmed M. ;
Kang, Ting-Guo ;
Cai, De-Cheng .
MOLECULES, 2019, 24 (21)
[45]   The Draize eye test [J].
Wilhelmus, KR .
SURVEY OF OPHTHALMOLOGY, 2001, 45 (06) :493-515
[46]  
World Health Organization, WHO COR DIS COVID 19
[47]   Classification of kinase inhibitors using a Bayesian model [J].
Xia, XY ;
Maliski, EG ;
Gallant, P ;
Rogers, D .
JOURNAL OF MEDICINAL CHEMISTRY, 2004, 47 (18) :4463-4470
[48]   Structural basis for the recognition of SARS-CoV-2 by full-length human ACE2 [J].
Yan, Renhong ;
Zhang, Yuanyuan ;
Li, Yaning ;
Xia, Lu ;
Guo, Yingying ;
Zhou, Qiang .
SCIENCE, 2020, 367 (6485) :1444-+
[49]   Molecular interaction and inhibition of SARS-CoV-2 binding to the ACE2 receptor [J].
Yang, Jinsung ;
Petitjean, Simon J. L. ;
Koehler, Melanie ;
Zhang, Qingrong ;
Dumitru, Andra C. ;
Chen, Wenzhang ;
Derclaye, Sylvie ;
Vincent, Stephane P. ;
Soumillion, Patrice ;
Alsteens, David .
NATURE COMMUNICATIONS, 2020, 11 (01)
[50]   Induction of Apoptosis in Human Cancer Cells Through Extrinsic and Intrinsic Pathways by Balanites aegyptiaca Furostanol Saponins and Saponin-Coated Silver Nanoparticles [J].
Yassin, Abdelrahman M. ;
El-Deeb, Nehal M. ;
Metwaly, Ahmed M. ;
El Fawal, Gomaa F. ;
Radwan, Mohamed M. ;
Hafez, Elsayed E. .
APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY, 2017, 182 (04) :1675-1693