Single Cell Technologies: Beyond Microfluidics

被引:13
作者
Li, Haikuo [1 ,2 ]
Humphreys, Benjamin D. [1 ,2 ]
机构
[1] Washington Univ, Sch Med, Div Nephrol, 660 South Euclid Ave,CB 8129, St Louis, MO 63110 USA
[2] Washington Univ, Sch Med, Dept Dev Biol, St Louis, MO 63110 USA
来源
KIDNEY360 | 2021年 / 2卷 / 07期
基金
美国国家卫生研究院;
关键词
genetics; basic science; genomics; single-cell analysis; small cytoplasmic RNA; GENE-EXPRESSION; CHROMATIN ACCESSIBILITY; RNA-SEQ; TRANSCRIPTOME; IDENTIFICATION; LINEAGE; ENABLES;
D O I
10.34067/KID.0001822021
中图分类号
R5 [内科学]; R69 [泌尿科学(泌尿生殖系疾病)];
学科分类号
1002 ; 100201 ;
摘要
Single-cell RNA-sequencing (scRNA-seq) has been widely adopted in recent years due to standardized protocols and automation, reliability, and standardized bioinformatic pipelines. The most widely adopted platform is the 10x Genomics solution. Although powerful, this system is limited by its high cost, moderate throughput, and the inability to customize due to fixed kit components. This study will cover new approaches that do not rely on microfluidics and thus have low entry costs, are highly customizable, and are within the reach of any laboratory possessing molecular biology expertise.
引用
收藏
页码:1196 / 1204
页数:9
相关论文
共 65 条
[1]   Identification of functionally primitive and immunophenotypically distinct subpopulations in secondary acute myeloid leukemia by mass cytometry [J].
Bandyopadhyay, Shovik ;
Fowles, Jared S. ;
Yu, Liyang ;
Fisher, Daniel A. C. ;
Oh, Stephen T. .
CYTOMETRY PART B-CLINICAL CYTOMETRY, 2019, 96 (01) :46-56
[2]   Single-cell mapping of lineage and identity in direct reprogramming [J].
Biddy, Brent A. ;
Kong, Wenjun ;
Kamimoto, Kenji ;
Guo, Chuner ;
Waye, Sarah E. ;
Sun, Tao ;
Morris, Samantha A. .
NATURE, 2018, 564 (7735) :219-+
[3]   An Engineered CRISPR-Cas9 Mouse Line for Simultaneous Readout of Lineage Histories and Gene Expression Profiles in Single Cells [J].
Bowling, Sarah ;
Sritharan, Duluxan ;
Osorio, Fernando G. ;
Nguyen, Maximilian ;
Cheung, Priscilla ;
Rodriguez-Fraticelli, Alejo ;
Patel, Sachin ;
Yuan, Wei-Chien ;
Fujiwara, Yuko ;
Li, Bin E. ;
Orkin, Stuart H. ;
Hormoz, Sahand ;
Camargo, Fernando D. .
CELL, 2020, 181 (06) :1410-+
[4]   Single-cell chromatin accessibility reveals principles of regulatory variation [J].
Buenostro, Jason D. ;
Wu, Beijing ;
Litzenburger, Ulrike M. ;
Ruff, Dave ;
Gonzales, Michael L. ;
Snyder, Michael P. ;
Chang, Howard Y. ;
Greenleaf, William J. .
NATURE, 2015, 523 (7561) :486-U264
[5]   A human cell atlas of fetal gene expression [J].
Cao, Junyue ;
O'Day, Diana R. ;
Pliner, Hannah A. ;
Kingsley, Paul D. ;
Deng, Mei ;
Daza, Riza M. ;
Zager, Michael A. ;
Aldinger, Kimberly A. ;
Blecher-Gonen, Ronnie ;
Zhang, Fan ;
Spielmann, Malte ;
Palis, James ;
Doherty, Dan ;
Steemers, Frank J. ;
Glass, Ian A. ;
Trapnell, Cole ;
Shendure, Jay .
SCIENCE, 2020, 370 (6518) :808-+
[6]   Sci-fate characterizes the dynamics of gene expression in single cells [J].
Cao, Junyue ;
Zhou, Wei ;
Steemers, Frank ;
Trapnell, Cole ;
Shendure, Jay .
NATURE BIOTECHNOLOGY, 2020, 38 (08) :980-+
[7]   The single-cell transcriptional landscape of mammalian organogenesis [J].
Cao, Junyue ;
Spielmann, Malte ;
Qiu, Xiaojie ;
Huang, Xingfan ;
Ibrahim, Daniel M. ;
Hill, Andrew J. ;
Zhang, Fan ;
Mundlos, Stefan ;
Christiansen, Lena ;
Steemers, Frank J. ;
Trapnell, Cole ;
Shendure, Jay .
NATURE, 2019, 566 (7745) :496-+
[8]   Joint profiling of chromatin accessibility and gene expression in thousands of single cells [J].
Cao, Junyue ;
Cusanovich, Darren A. ;
Ramani, Vijay ;
Aghamirzaie, Delasa ;
Pliner, Hannah A. ;
Hill, Andrew J. ;
Daza, Riza M. ;
McFaline-Figueroa, Jose L. ;
Packer, Jonathan S. ;
Christiansen, Lena ;
Steemers, Frank J. ;
Adey, Andrew C. ;
Trapnell, Cole ;
Shendure, Jay .
SCIENCE, 2018, 361 (6409) :1380-1385
[9]   Comprehensive single-cell transcriptional profiling of a multicellular organism [J].
Cao, Junyue ;
Packer, Jonathan S. ;
Ramani, Vijay ;
Cusanovich, Darren A. ;
Huynh, Chau ;
Daza, Riza ;
Qiu, Xiaojie ;
Lee, Choli ;
Furlan, Scott N. ;
Steemers, Frank J. ;
Adey, Andrew ;
Waterston, Robert H. ;
Trapnell, Cole ;
Shendure, Jay .
SCIENCE, 2017, 357 (6352) :661-667
[10]   Spatially resolved, highly multiplexed RNA profiling in single cells [J].
Chen, Kok Hao ;
Boettiger, Alistair N. ;
Moffitt, Jeffrey R. ;
Wang, Siyuan ;
Zhuang, Xiaowei .
SCIENCE, 2015, 348 (6233)