Changes in Codon-Pair Bias of Human Immunodeficiency Virus Type 1 Affect Virus Replication

被引:2
作者
Angel Martinez, Miguel [1 ]
机构
[1] Hosp Badalona Germans Trias & Pujol, Fundacio IrsiCaixa, Badalona, Spain
来源
EXTENDED ABSTRACTS SPRING 2014: HAMILTONIAN SYSTEMS AND CELESTIAL MECHANICS; VIRUS DYNAMICS AND EVOLUTION | 2015年
关键词
USAGE; ROBUSTNESS; DESIGN; GENOME;
D O I
10.1007/978-3-319-22129-8_23
中图分类号
O29 [应用数学];
学科分类号
070104 ;
摘要
引用
收藏
页码:131 / 135
页数:5
相关论文
共 18 条
[1]   tRNA properties help shape codon pair preferences in open reading frames [J].
Buchan, JR ;
Aucott, LS ;
Stansfield, I .
NUCLEIC ACIDS RESEARCH, 2006, 34 (03) :1015-1027
[2]   Virus attenuation by genome-scale changes in codon pair bias [J].
Coleman, J. Robert ;
Papamichail, Dimitris ;
Skiena, Steven ;
Futcher, Bruce ;
Wimmer, Eckard ;
Mueller, Steffen .
SCIENCE, 2008, 320 (5884) :1784-1787
[3]   The Fitness Effects of Synonymous Mutations in DNA and RNA Viruses [J].
Cuevas, Jose M. ;
Domingo-Calap, Pilar ;
Sanjuan, Rafael .
MOLECULAR BIOLOGY AND EVOLUTION, 2012, 29 (01) :17-20
[4]   NONRANDOM UTILIZATION OF CODON PAIRS IN ESCHERICHIA-COLI [J].
GUTMAN, GA ;
HATFIELD, GW .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1989, 86 (10) :3699-3703
[5]   What drives codon choices in human genes? [J].
Karlin, S ;
Mrazek, J .
JOURNAL OF MOLECULAR BIOLOGY, 1996, 262 (04) :459-472
[6]   Codon Usage Determines the Mutational Robustness, Evolutionary Capacity, and Virulence of an RNA Virus [J].
Lauring, Adam S. ;
Acevedo, Ashley ;
Cooper, Samantha B. ;
Andino, Raul .
CELL HOST & MICROBE, 2012, 12 (05) :623-632
[7]   Codon-usage-based inhibition of HIV protein synthesis by human schlafen 11 [J].
Li, Manqing ;
Kao, Elaine ;
Gao, Xia ;
Sandig, Hilary ;
Limmer, Kirsten ;
Pavon-Eternod, Mariana ;
Jones, Thomas E. ;
Landry, Sebastien ;
Pan, Tao ;
Weitzman, Matthew D. ;
David, Michael .
NATURE, 2012, 491 (7422) :125-U145
[8]   Changes in codon-pair bias of human immunodeficiency virus type 1 have profound effects on virus replication in cell culture [J].
Martrus, Gloria ;
Nevot, Maria ;
Andres, Cristina ;
Clotet, Bonaventura ;
Angel Martinez, Miguel .
RETROVIROLOGY, 2013, 10
[9]   Live attenuated influenza virus vaccines by computer-aided rational design [J].
Mueller, Steffen ;
Coleman, J. Robert ;
Papamichail, Dimitris ;
Ward, Charles B. ;
Nimnual, Anjaruwee ;
Futcher, Bruce ;
Skiena, Steven ;
Wimmer, Eckard .
NATURE BIOTECHNOLOGY, 2010, 28 (07) :723-U1729
[10]   RNA Interference as a Tool for Exploring HIV-1 Robustness [J].
Nevot, Maria ;
Martrus, Gloria ;
Clotet, Bonaventura ;
Angel Martinez, Miguel .
JOURNAL OF MOLECULAR BIOLOGY, 2011, 413 (01) :84-96