Epitranscriptomics: regulation of mRNA metabolism through modifications

被引:95
作者
Peer, Eyal [1 ,2 ,3 ]
Rechavi, Gideon [1 ,2 ,3 ]
Dominissini, Dan [1 ,2 ,3 ]
机构
[1] Tel Aviv Univ, Sackler Sch Med, Tel Aviv, Israel
[2] Chaim Sheba Med Ctr, Canc Res Ctr, Tel Hashomer, Israel
[3] Chaim Sheba Med Ctr, Wohl Ctr Translat Med, Tel Hashomer, Israel
关键词
TRANSLATION EFFICIENCY; METHYLATION; N-1-METHYLADENOSINE; N-6-METHYLADENOSINE; N6-METHYLADENOSINE; REVEALS; NUCLEAR; METHYLTRANSFERASE; THERMODYNAMICS; TRANSCRIPTION;
D O I
10.1016/j.cbpa.2017.10.008
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Cellular RNAs can be modified post-transcriptionally with dynamic and reversible chemical modifications. These modifications can alter the structure and metabolism of mRNA, but only recent methodological and conceptual advances allowed systematic mapping and functional analysis to unfold the role they play in mRNA biology. Mapping the most common internal mRNA modification, N-6-methyladenosine (m(6)A), paved the way for the deciphering of other types of mRNA modifications, such as N-1-methyladenosine (m(1)A). RNA methylation provides dynamic regulation to the processing, export, translation and stability of mRNA molecules, thereby influencing fundamental biological and pathological processes such as differentiation, cellular response to stress and tumorigenesis. This review summarizes the key methods and the recent discoveries in the field of epitranscriptomics through the prism of post-transcriptional mRNA methylation in eukaryotes.
引用
收藏
页码:93 / 98
页数:6
相关论文
共 56 条
[1]   Coordination of m6A mRNA Methylation and Gene Transcription by ZFP217 Regulates Pluripotency and Reprogramming [J].
Aguilo, Francesca ;
Zhang, Fan ;
Sancho, Ana ;
Fidalgo, Miguel ;
Di Cecilia, Serena ;
Vashisht, Ajay ;
Lee, Dung-Fang ;
Chen, Chih-Hung ;
Rengasamy, Madhumitha ;
Andino, Blanca ;
Jahouh, Farid ;
Roman, Angel ;
Krig, Sheryl R. ;
Wang, Rong ;
Zhang, Weijia ;
Wohlschlegel, James A. ;
Wang, Jianlong ;
Walsh, Martin J. .
CELL STEM CELL, 2015, 17 (06) :689-704
[2]   HNRNPA2B1 Is a Mediator of m6A-Dependent Nuclear RNA Processing Events [J].
Alarcon, Claudio R. ;
Goodarzi, Hani ;
Lee, Hyeseung ;
Liu, Xuhang ;
Tavazoie, Saeed ;
Tavazoie, Sohail F. .
CELL, 2015, 162 (06) :1299-1308
[3]   m6A RNA Modification Controls Cell Fate Transition in Mammalian Embryonic Stem Cells [J].
Batista, Pedro J. ;
Molinie, Benoit ;
Wang, Jinkai ;
Qu, Kun ;
Zhang, Jiajing ;
Li, Lingjie ;
Bouley, Donna M. ;
Lujan, Ernesto ;
Haddad, Bahareh ;
Daneshvar, Kaveh ;
Carter, Ava C. ;
Flynn, Ryan A. ;
Zhou, Chan ;
Lim, Kok-Seong ;
Dedon, Peter ;
Wernig, Marius ;
Mullen, Alan C. ;
Xing, Yi ;
Giallourakis, Cosmas C. ;
Chang, Howard Y. .
CELL STEM CELL, 2014, 15 (06) :707-719
[4]   Profiling of Ribose Methylations in RNA by High-Throughput Sequencing [J].
Birkedal, Ulf ;
Christensen-Dalsgaard, Mikkel ;
Krogh, Nicolai ;
Sabarinathan, Radhakrishnan ;
Gorodkin, Jan ;
Nielsen, Henrik .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2015, 54 (02) :451-455
[5]   IDENTIFICATION AND MAPPING OF N6-METHYLADENOSINE CONTAINING SEQUENCES IN SIMIAN VIRUS-40 RNA [J].
CANAANI, D ;
KAHANA, C ;
LAVI, S ;
GRONER, Y .
NUCLEIC ACIDS RESEARCH, 1979, 6 (08) :2879-2899
[6]   N6-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics [J].
Choi, Junhong ;
Ieong, Ka-Weng ;
Demirci, Hasan ;
Chen, Jin ;
Petrov, Alexey ;
Prabhakar, Arjun ;
O'Leary, Sean E. ;
Dominissini, Dan ;
Rechavi, Gideon ;
Soltis, S. Michael ;
Ehrenberg, Mans ;
Puglisi, Joseph D. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2016, 23 (02) :110-+
[7]   m6A RNA Methylation Regulates the Self-Renewal and Tumorigenesis of Glioblastoma Stem Cells [J].
Cui, Qi ;
Shi, Hailing ;
Ye, Peng ;
Li, Li ;
Qu, Qiuhao ;
Sun, Guoqiang ;
Sun, Guihua ;
Lu, Zhike ;
Huang, Yue ;
Yang, Cai-Guang ;
Riggs, Arthur D. ;
He, Chuan ;
Shi, Yanhong .
CELL REPORTS, 2017, 18 (11) :2622-2634
[8]  
Dai Q., 2017, Nat Meth, P1
[9]   The dynamic N1-methyladenosine methylome in eukaryotic messenger RNA [J].
Dominissini, Dan ;
Nachtergaele, Sigrid ;
Moshitch-Moshkovitz, Sharon ;
Peer, Eyal ;
Kol, Nitzan ;
Ben-Haim, Moshe Shay ;
Dai, Qing ;
Di Segni, Ayelet ;
Salmon-Divon, Mali ;
Clark, Wesley C. ;
Zheng, Guanqun ;
Pan, Tao ;
Solomon, Oz ;
Eyal, Eran ;
Hershkovitz, Vera ;
Han, Dali ;
Dore, Louis C. ;
Amariglio, Ninette ;
Rechavi, Gideon ;
He, Chuan .
NATURE, 2016, 530 (7591) :441-+
[10]   Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq [J].
Dominissini, Dan ;
Moshitch-Moshkovitz, Sharon ;
Schwartz, Schraga ;
Salmon-Divon, Mali ;
Ungar, Lior ;
Osenberg, Sivan ;
Cesarkas, Karen ;
Jacob-Hirsch, Jasmine ;
Amariglio, Ninette ;
Kupiec, Martin ;
Sorek, Rotem ;
Rechavi, Gideon .
NATURE, 2012, 485 (7397) :201-U84