Characterization of novel microsatellite markers in the Antarctic silverfish Pleuragramma antarcticum and cross species amplification in other Notothenioidei

被引:3
作者
Papetti, Chiara [1 ]
Marino, Ilaria Anna Maria [1 ]
Agostini, Cecilia [1 ]
Bisol, Paolo Maria [1 ]
Patarnello, Tomaso [2 ]
Zane, Lorenzo [1 ]
机构
[1] Univ Padua, Dept Biol, I-35121 Padua, Italy
[2] Univ Padua, Dept Publ Hlth Comparat Pathol & Vet Hygene, I-35020 Legnaro, Pd, Italy
基金
美国国家科学基金会;
关键词
Pleuragramma antarcticum; Antarctic silverfish; Notothenioidei; Southern Ocean; Microsatellite; FIASCO protocol; EARLY-LIFE STAGES; DNA MARKERS; ROSS SEA; ALLELES;
D O I
10.1007/s12686-010-9336-9
中图分类号
X176 [生物多样性保护];
学科分类号
090705 ;
摘要
We characterized nine polymorphic microsatellites by an enriched library from the Antarctic silverfish Pleuragramma antarcticum, a key species in the high Antarctic zone of the Southern Ocean. The number of alleles scored ranged from 7 to 39, whereas the observed and expected heterozygosity ranged from 0.4000 to 0.9750 and from 0.3943 to 0.9782, respectively. Cross-amplification was tested in the 3 species of the genus Chionodraco (Channichthyidae). These new microsatellites could potentially be useful in further investigations on P. antarcticum for which many questions on population structure and exposition to global environment change are still open to debate.
引用
收藏
页码:259 / 262
页数:4
相关论文
共 13 条
[1]   Automated binning of microsatellite alleles: problems and solutions [J].
Amos, W. ;
Hoffman, J. I. ;
Frodsham, A. ;
Zhang, L. ;
Best, S. ;
Hill, A. V. S. .
MOLECULAR ECOLOGY NOTES, 2007, 7 (01) :10-14
[2]   CREATE: a software to create input files from diploid genotypic data for 52 genetic software programs [J].
Coombs, J. A. ;
Letcher, B. H. ;
Nislow, K. H. .
MOLECULAR ECOLOGY RESOURCES, 2008, 8 (03) :578-580
[3]   Microsatellite null alleles in parentage analysis [J].
Dakin, EE ;
Avise, JC .
HEREDITY, 2004, 93 (05) :504-509
[4]   The role of notothenioid fish in the food web of the Ross Sea shelf waters: a review [J].
La Mesa, M ;
Eastman, JT ;
Vacchi, M .
POLAR BIOLOGY, 2004, 27 (06) :321-338
[5]   Characterization of 79 microsatellite DNA markers in the Pacific oyster Crassostrea gigas [J].
Li, G ;
Hubert, S ;
Bucklin, K ;
Ribes, V ;
Hedgecock, D .
MOLECULAR ECOLOGY NOTES, 2003, 3 (02) :228-232
[6]   Antarctic sea ice change and variability - Physical and ecological implications [J].
Massom, Robert A. ;
Stammerjohn, Sharon E. .
POLAR SCIENCE, 2010, 4 (02) :149-186
[7]  
PATWARY MU, 1994, J SHELLFISH RES, V13, P547
[8]   GENEPOP (VERSION-1.2) - POPULATION-GENETICS SOFTWARE FOR EXACT TESTS AND ECUMENICISM [J].
RAYMOND, M ;
ROUSSET, F .
JOURNAL OF HEREDITY, 1995, 86 (03) :248-249
[9]   Antioxidant efficiency in early life stages of the Antarctic silverfish, Pleuragramma antarcticum:: Responsiveness to pro-oxidant conditions of platelet ice and chemical exposure [J].
Regoli, F ;
Nigro, M ;
Benedetti, M ;
Fattorini, D ;
Gorbi, S .
AQUATIC TOXICOLOGY, 2005, 75 (01) :43-52
[10]   Isolation and characterization of eight microsatellite loci in the icefish Chaenocephalus aceratus (Perciformes, Notothenioidei, Channichthyidae) [J].
Susana, Emanuele ;
Papetti, Chiara ;
Barbisan, Federica ;
Bortolotto, Erica ;
Buccoli, Simona ;
Patarnello, Tomaso ;
Zane, Lorenzo .
MOLECULAR ECOLOGY NOTES, 2007, 7 (05) :791-793