Multiple-Time Step Ab Initio Molecular Dynamics Based on Two-Electron Integral Screening

被引:15
作者
Fatehi, Shervin
Steele, Ryan P. [1 ]
机构
[1] Univ Utah, Dept Chem, Salt Lake City, UT 84112 USA
基金
美国国家科学基金会;
关键词
SYMPLECTIC INTEGRATORS; BORN-OPPENHEIMER; HARTREE-FOCK; MESH EWALD; ALGORITHM; SIMULATIONS; SYSTEMS; SCALES; DERIVATIVES; PROTEINS;
D O I
10.1021/ct500904x
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A multiple-timestep ab initio molecular dynamics scheme based on varying the two-electron integral screening method used in Hartree-Fock or density functional theory calculations is presented. Although screening is motivated by numerical considerations, it is also related to separations in the length- and timescales characterizing forces in a molecular system: Loose thresholds are sufficient to describe fast motions over short distances, while tight thresholds may be employed for larger length scales and longer times, leading to a practical acceleration of ab initio molecular dynamics simulations. Standard screening approaches can lead, however, to significant discontinuities in (and inconsistencies between) the energy and gradient when the screening threshold is loose, making them inappropriate for use in dynamics. To remedy this problem, a consistent window-screening method that smooths these discontinuities is devised. Further algorithmic improvements reuse electronic-structure information within the dynamics step and enhance efficiency relative to a naive multiple-timestepping protocol. The resulting scheme is shown to realize meaningful reductions in the cost of Hartree-Fock and B3LYP simulations of a moderately large system, the protonated sarcosine/glycine dipeptide embedded in a 19-water cluster.
引用
收藏
页码:884 / 898
页数:15
相关论文
共 81 条
[1]  
Adamson R. D., 1995, THESIS MASSEY U PALM
[2]  
Adamson RD, 1999, J COMPUT CHEM, V20, P921, DOI 10.1002/(SICI)1096-987X(19990715)20:9<921::AID-JCC3>3.0.CO
[3]  
2-K
[4]   Chemistry without Coulomb tails [J].
Adamson, RD ;
Dombroski, JP ;
Gill, PMW .
CHEMICAL PHYSICS LETTERS, 1996, 254 (5-6) :329-336
[5]  
Allen M. P., 1989, COMPUTER SIMULATION, p[6, 71]
[6]   PRINCIPLES FOR A DIRECT SCF APPROACH TO LCAO-MO ABINITIO CALCULATIONS [J].
ALMLOF, J ;
FAEGRI, K ;
KORSELL, K .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1982, 3 (03) :385-399
[7]   Efficient mixed-force first-principles molecular dynamics [J].
Anglada, E ;
Junquera, J ;
Soler, JM .
PHYSICAL REVIEW E, 2003, 68 (05)
[8]  
[Anonymous], NIC SERIES
[9]   Inherent speedup limitations in multiple time step/Particle Mesh Ewald algorithms [J].
Barash, D ;
Yang, LJ ;
Qian, XL ;
Schlick, T .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2003, 24 (01) :77-88
[10]   A MULTICENTER NUMERICAL-INTEGRATION SCHEME FOR POLYATOMIC-MOLECULES [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1988, 88 (04) :2547-2553