Emerging Role of isomiRs in Cancer: State of the Art and Recent Advances

被引:13
作者
Zelli, Veronica [1 ,2 ]
Compagnoni, Chiara [1 ]
Capelli, Roberta [1 ]
Corrente, Alessandra [1 ]
Cornice, Jessica [1 ]
Vecchiotti, Davide [1 ]
Di Padova, Monica [1 ]
Zazzeroni, Francesca [1 ]
Alesse, Edoardo [1 ]
Tessitore, Alessandra [1 ,2 ]
机构
[1] Univ Aquila, Dept Biotechnol & Appl Clin Sci, Via Vetoio, I-67100 Laquila, Italy
[2] Univ Aquila, Ctr Mol Diagnost & Adv Therapies, Via Petrini, I-67100 Laquila, Italy
关键词
isomiRs; miRNome; miRNA variants; expression pattern; cancer; RNA-DERIVED FRAGMENTS; IN-DEPTH CHARACTERIZATION; MICRORNA TRANSCRIPTOME; DICER1; MUTATIONS; MIRNA ISOFORMS; 3' ADENYLATION; BREAST-CANCER; SEED REGION; EXPRESSION; VARIANTS;
D O I
10.3390/genes12091447
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The advent of Next Generation Sequencing technologies brought with it the discovery of several microRNA (miRNA) variants of heterogeneous lengths and/or sequences. Initially ascribed to sequencing errors/artifacts, these isoforms, named isomiRs, are now considered non-canonical variants that originate from physiological processes affecting the canonical miRNA biogenesis. To date, accurate IsomiRs abundance, biological activity, and functions are not completely understood; however, the study of isomiR biology is an area of great interest due to their high frequency in the human miRNome, their putative functions in cooperating with the canonical miRNAs, and potential for exhibiting novel functional roles. The discovery of isomiRs highlighted the complexity of the small RNA transcriptional landscape in several diseases, including cancer. In this field, the study of isomiRs could provide further insights into the miRNA biology and its implication in oncogenesis, possibly providing putative new cancer diagnostic, prognostic, and predictive biomarkers as well. In this review, a comprehensive overview of the state of research on isomiRs in different cancer types, including the most common tumors such as breast cancer, colorectal cancer, melanoma, and prostate cancer, as well as in the less frequent tumors, as for example brain tumors and hematological malignancies, will be summarized and discussed.
引用
收藏
页数:21
相关论文
共 139 条
  • [1] Expanding the repertoire of miRNAs and miRNA-offset RNAs expressed in multiple myeloma by small RNA deep sequencing
    Agnelli, Luca
    Bisognin, Andrea
    Todoerti, Katia
    Manzoni, Martina
    Taiana, Elisa
    Galletti, Serena
    Cutrona, Giovanna
    Gaffo, Enrico
    Bortoluzzi, Stefania
    Neri, Antonino
    [J]. BLOOD CANCER JOURNAL, 2019, 9 (3)
  • [2] Hypoxic signature of microRNAs in glioblastoma: insights from small RNA deep sequencing
    Agrawal, Rahul
    Pandey, Priyatama
    Jha, Prerana
    Dwivedi, Vivek
    Sarkar, Chitra
    Kulshreshtha, Ritu
    [J]. BMC GENOMICS, 2014, 15
  • [3] Two-tailed RT-qPCR: a novel method for highly accurate miRNA quantification
    Androvic, Peter
    Valihrach, Lukas
    Elling, Julie
    Sjoback, Robert
    Kubista, Mikael
    [J]. NUCLEIC ACIDS RESEARCH, 2017, 45 (15)
  • [4] Argonaute2 complexes carry a population of circulating microRNAs independent of vesicles in human plasma
    Arroyo, Jason D.
    Chevillet, John R.
    Kroh, Evan M.
    Ruf, Ingrid K.
    Pritchard, Colin C.
    Gibson, Donald F.
    Mitchell, Patrick S.
    Bennett, Christopher F.
    Pogosova-Agadjanyan, Era L.
    Stirewalt, Derek L.
    Tait, Jonathan F.
    Tewari, Muneesh
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (12) : 5003 - 5008
  • [5] A Novel miR-451a isomiR, Associated with Amelanotypic Phenotype, Acts as a Tumor Suppressor in Melanoma by Retarding Cell Migration and Invasion
    Babapoor, Sankhiros
    Fleming, Elizabeth
    Wu, Rong
    Dadras, Soheil S.
    [J]. PLOS ONE, 2014, 9 (09): : e120
  • [6] Beta Cell 5′-Shifted isomiRs Are Candidate Regulatory Hubs in Type 2 Diabetes
    Baran-Gale, Jeanette
    Fannin, Emily E.
    Kurtz, C. Lisa
    Sethupathy, Praveen
    [J]. PLOS ONE, 2013, 8 (09):
  • [7] mRNA Targeting to Endoplasmic Reticulum Precedes Ago Protein Interaction and MicroRNA (miRNA)-mediated Translation Repression in Mammalian Cells
    Barman, Bahnisikha
    Bhattacharyya, Suvendra N.
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2015, 290 (41) : 24650 - 24656
  • [8] RNA-seq reveals distinctive RNA profiles of small extracellular vesicles from different human liver cancer cell lines
    Berardocco, Martina
    Radeghieri, Annalisa
    Busatto, Sara
    Gallorini, Marialucia
    Raggi, Chiara
    Gissi, Clarissa
    D'Agnano, Igea
    Bergese, Paolo
    Felsani, Armando
    Berardi, Anna C.
    [J]. ONCOTARGET, 2017, 8 (47) : 82920 - 82939
  • [9] Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    Berezikov, Eugene
    Robine, Nicolas
    Samsonova, Anastasia
    Westholm, Jakub O.
    Naqvi, Ammar
    Hung, Jui-Hung
    Okamura, Katsutomo
    Dai, Qi
    Bortolamiol-Becet, Diane
    Martin, Raquel
    Zhao, Yongjun
    Zamore, Phillip D.
    Hannon, Gregory J.
    Marra, Marco A.
    Weng, Zhiping
    Perrimon, Norbert
    Lai, Eric C.
    [J]. GENOME RESEARCH, 2011, 21 (02) : 203 - 215
  • [10] The isomiR-140-3p-regulated mevalonic acid pathway as a potential target for prevention of triple negative breast cancer
    Bhardwaj, Anjana
    Singh, Harpreet
    Trinidad, Celestine Marie
    Albarracin, Constance T.
    Hunt, Kelly K.
    Bedrosian, Isabelle
    [J]. BREAST CANCER RESEARCH, 2018, 20