Draft genome sequence of the oomycetePythium destruensstrain ATCC 64221 from a horse with pythiosis in Australia

被引:9
作者
Krajaejun, Theerapong [1 ]
Kittichotirat, Weerayuth [2 ]
Patumcharoenpol, Preecha [2 ]
Rujirawat, Thidarat [3 ]
Lohnoo, Tassanee [3 ]
Yingyong, Wanta [3 ]
机构
[1] Mahidol Univ, Ramathibodi Hosp, Fac Med, Dept Pathol, Bangkok, Thailand
[2] King Mongkuts Univ Technol Thonburi, Syst Biol & Bioinformat Res Grp, Pilot Plant Dev & Training Inst, Bangkok, Thailand
[3] Mahidol Univ, Ramathibodi Hosp, Fac Med, Res Ctr, Bangkok, Thailand
关键词
Pythium destruens; Pythium insidiosum; Pythiosis; Genome sequence; Australia; PYTHIUM-INSIDIOSUM;
D O I
10.1186/s13104-020-05168-1
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Objectives Genome sequences are a vital resource for accelerating the biological exploration of an organism of interest.Pythium destruens(a synonym ofPythium insidiosum) causes a difficult-to-treat infectious disease called pythiosis worldwide. Detection and management of pythiosis are challenging. Basic knowledge of the disease is lacking. Genomes of this organism isolated from different continents (i.e., Asia and the Americas) have been sequenced and publicly available. Here, we sequenced the genome of an Australian isolate ofP. destruens. Genome data will facilitate the comparative analysis of this and related species at the molecular level. Data description Genomic DNA of theP. destruensstrain ATCC 64221, isolated from a horse with pythiosis in Australia, was used to prepare one paired-end library (with 180-bp insert) for next-generation sequencing, using the Illumina HiSeq 2500 short-read platform. Raw reads were cleaned and assembled by several bioinformatics tools. A total of 20,860,454 processed reads, accounted for 2,614,890,553 total bases, can be assembled into a 37.8-Mb genome, consisting 13,060 contigs (average length: 2896 bases; range: 300-142,967),N(50)of 11,370 bases, and 2.9% 'N' composition. The genome was determined 85.9% completeness, contained 14,424 predicted genes, and can be retrieved online at the NCBI/DDBJ databases under the accession number BCFQ01000000.1.
引用
收藏
页数:4
相关论文
共 26 条
[1]   Whole genome sequence of the emerging oomycete pathogen Pythium insidiosum strain CDC-B5653 isolated from an infected human in the USA [J].
Ascunce, Marina S. ;
Huguet-Tapia, Jose C. ;
Braun, Edward L. ;
Ortiz-Urquiza, Almudena ;
Keyhani, Nemat O. ;
Goss, Erica M. .
GENOMICS DATA, 2016, 7 :60-61
[2]   Performance comparison of immunodiffusion, enzyme-linked immunosorbent assay, immunochromatography and hemagglutination for serodiagnosis of human pythiosis [J].
Chareonsirisuthigul, Takol ;
Khositnithikul, Rommanee ;
Intaramat, Akarin ;
Inkomlue, Ruchuros ;
Sriwanichrak, Kanchana ;
Piromsontikorn, Savittree ;
Kitiwanwanich, Sureewan ;
Lowhnoo, Tassanee ;
Yingyong, Wanta ;
Chaiprasert, Angkana ;
Banyong, Ramrada ;
Ratanabanangkoon, Kavi ;
Brandhorst, Tristan T. ;
Krajaejun, Theerapong .
DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE, 2013, 76 (01) :42-45
[3]   Recent update in diagnosis and treatment of human pythiosis [J].
Chitasombat, Maria Nina ;
Jongkhajornpong, Passara ;
Lekhanont, Kaevalin ;
Krajaejun, Theerapong .
PEERJ, 2020, 8
[4]   Pythium insidiosum: An overview [J].
Gaastra, Wim ;
Lipman, Len J. A. ;
De Cock, Arthur W. A. M. ;
Exel, Tim K. ;
Pegge, Raymond B. G. ;
Scheurwater, Josje ;
Vilela, Raquel ;
Mendoza, Leonel .
VETERINARY MICROBIOLOGY, 2010, 146 (1-2) :1-16
[5]   MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects [J].
Holt, Carson ;
Yandell, Mark .
BMC BIOINFORMATICS, 2011, 12
[6]   Protein A/G-based immunochromatographic test for serodiagnosis of pythiosis in human and animal subjects from Asia and Americas [J].
Intaramat, Akarin ;
Sornprachum, Thiwaree ;
Chantrathonkul, Bunkuea ;
Chaisuriya, Papada ;
Lohnoo, Tassanee ;
Yingyong, Wanta ;
Jongruja, Nujarin ;
Kumsang, Yothin ;
Sandee, Alisa ;
Chaiprasert, Angkana ;
Banyong, Ramrada ;
Santurio, Janio M. ;
Grooters, Amy M. ;
Ratanabanangkoon, Kavi ;
Krajaejun, Theerapong .
MEDICAL MYCOLOGY, 2016, 54 (06) :641-647
[7]   Protein A/G-based enzyme-linked immunosorbent assay for detection of anti-Pythium insidiosum antibodies in human and animal subjects [J].
Jaturapaktrarak, Chalisa ;
Payattikul, Penpan ;
Lohnoo, Tassanee ;
Kumsang, Yothin ;
Laikul, Aree ;
Pathomsakulwong, Watcharapol ;
Yurayart, Chompoonek ;
Tonpitak, Walaiporn ;
Krajaejun, Theerapong .
BMC RESEARCH NOTES, 2020, 13 (01)
[8]  
Kittichotirat W., 2019, Journal of Infectious Diseases and Antimicrobial Agents, V36, P47
[9]  
Kittichotirat W, 2017, DATA BRIEF, V15, P896, DOI 10.1016/j.dib.2017.10.047
[10]   Clinical and epidemiological analyses of human pythiosis in Thailand [J].
Krajaejun, Theerapong ;
Sathapatayavongs, Boonmee ;
Pracharktam, Roongnapa ;
Nitiyanant, Prawat ;
Leelachaikul, Paisan ;
Wanachiwanawin, Wanchai ;
Chaiprasert, Angkana ;
Assanasen, Paraya ;
Saipetch, Marisa ;
Mootsikapun, Piroon ;
Chetchotisakd, Ploenchan ;
Lekhakula, Arnuparp ;
Mitarnun, Winyou ;
Kalnauwakul, Sineenart ;
Supparatpinyo, Khuanchai ;
Chaiwarith, Romanee ;
Chiewchanvit, Siri ;
Tananuvat, Napaporn ;
Srisiri, Sawet ;
Suankratay, Chusana ;
Kulwichit, Wanla ;
Wongsaisuwan, Mawin ;
Somkaew, Shawarash .
CLINICAL INFECTIOUS DISEASES, 2006, 43 (05) :569-576