A call for likelihood phylogenetics even when the process of sequence evolution is heterogeneous

被引：32
作者：
Gaucher, EA [1 ]
Miyamoto, MM
机构：
[1] Fdn Appl Mol Evolut, Gainesville, FL 32601 USA
[2] Univ Florida, Dept Zool, Gainesville, FL 32611 USA
来源：
MOLECULAR PHYLOGENETICS AND EVOLUTION | 2005年 / 37卷 / 03期
基金：
美国国家航空航天局;
关键词：
D O I：
10.1016/j.ympev.2005.03.027
中图分类号：
Q5 [生物化学]; Q7 [分子生物学];
学科分类号：
071010 ; 081704 ;
摘要：
[No abstract available]
引用
收藏
页码：928 / 931
页数：4
相关论文
共 21 条
[1]   CASES IN WHICH PARSIMONY OR COMPATIBILITY METHODS WILL BE POSITIVELY MISLEADING [J].
FELSENSTEIN, J .
SYSTEMATIC ZOOLOGY, 1978, 27 (04) :401-410
[2]  
Felsenstein Joseph, 2004, Inferring_phylogenies, V2
[3]   AN IMPROVED METHOD FOR DETERMINING CODON VARIABILITY IN A GENE AND ITS APPLICATION TO RATE OF FIXATION OF MUTATIONS IN EVOLUTION [J].
FITCH, WM ;
MARKOWITZ, E .
BIOCHEMICAL GENETICS, 1970, 4 (05) :579-+
[4]   Maximum-likelihood phylogenetic analysis under a covarion-like model [J].
Galtier, N .
MOLECULAR BIOLOGY AND EVOLUTION, 2001, 18 (05) :866-873
[5]   Predicting functional divergence in protein evolution by site-specific rate shifts [J].
Gaucher, EA ;
Gu, X ;
Miyamoto, MM ;
Benner, SA .
TRENDS IN BIOCHEMICAL SCIENCES, 2002, 27 (06) :315-321
[6]   APPROACHES FOR ASSESSING PHYLOGENETIC ACCURACY [J].
HILLIS, DM .
SYSTEMATIC BIOLOGY, 1995, 44 (01) :3-16
[7]   SUCCESS OF PHYLOGENETIC METHODS IN THE 4-TAXON CASE [J].
HUELSENBECK, JP ;
HILLIS, DM .
SYSTEMATIC BIOLOGY, 1993, 42 (03) :247-264
[8]   Testing a covariotide model of DNA substitution [J].
Huelsenbeck, JP .
MOLECULAR BIOLOGY AND EVOLUTION, 2002, 19 (05) :698-707
[9]   PERFORMANCE OF PHYLOGENETIC METHODS IN SIMULATION [J].
HUELSENBECK, JP .
SYSTEMATIC BIOLOGY, 1995, 44 (01) :17-48
[10]   Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1α phylogenies [J].
Inagaki, Y ;
Susko, E ;
Fast, NM ;
Roger, AJ .
MOLECULAR BIOLOGY AND EVOLUTION, 2004, 21 (07) :1340-1349
123