Complete chloroplast genome and phylogenetic analysis of Acer leipoense (Sapindaceae), a rare plant from Southwest China

被引:1
作者
Liu, Qiaoyun [1 ]
Wang, Ao [1 ]
Gao, Yongwei [1 ]
Zhao, Liangcheng [1 ,2 ]
机构
[1] Beijing Forestry Univ, Sch Ecol & Nat Conservat, Beijing, Peoples R China
[2] Beijing Forestry Univ, Museum Beijing Forestry Univ, Beijing, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2022年 / 7卷 / 01期
关键词
Acer leipoense; chloroplast genome; endangered; phylogeny; Sapindaceae;
D O I
10.1080/23802359.2021.2017369
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Acer leipoense is a rare and endangered species of the Sapindaceae with a very restricted distribution in Sichuan, China. In this study, the complete chloroplast genome of A. leipoense was characterized by de novo assembly using high-throughput sequencing. The chloroplast genome was 155,702 bp in length; it contained a large single copy region (85,890 bp) and a small single copy region (18,100 bp), which were separated by a pair of 25,856-bp inverted repeat regions. A total of 128 genes were predicted, including 83 protein-coding genes, 37 tRNA genes, and eight rRNA genes. A phylogenetic analysis of 23 chloroplast genome sequences from the genus Acer revealed that A. leipoense was closely related to A. yangbiense.
引用
收藏
页码:172 / 174
页数:3
相关论文
共 12 条
[1]  
Ayres DL, 2012, SYST BIOL, V61, P170, DOI [10.1093/sysbio/syr100, 10.1093/sysbio/sys029]
[2]   Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis [J].
Castresana, J .
MOLECULAR BIOLOGY AND EVOLUTION, 2000, 17 (04) :540-552
[3]   Acer yangbiense (Aceraceae), a new species from Yunnan, China [J].
Chen, YS ;
Yang, QE ;
Zhu, GH .
NOVON, 2003, 13 (03) :296-299
[4]  
Fang W. P., 1966, Acta Phytotaxonomica Sinica, Peking, V11, P139
[5]   THE RETENTION INDEX AND HOMOPLASY EXCESS [J].
FARRIS, JS .
SYSTEMATIC ZOOLOGY, 1989, 38 (04) :406-407
[6]   GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes [J].
Jin, Jian-Jun ;
Yu, Wen-Bin ;
Yang, Jun-Bo ;
Song, Yu ;
dePamphilis, Claude W. ;
Yi, Ting-Shuang ;
Li, De-Zhu .
GENOME BIOLOGY, 2020, 21 (01)
[7]   MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization [J].
Katoh, Kazutaka ;
Rozewicki, John ;
Yamada, Kazunori D. .
BRIEFINGS IN BIOINFORMATICS, 2019, 20 (04) :1160-1166
[8]   IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies [J].
Lam-Tung Nguyen ;
Schmidt, Heiko A. ;
von Haeseler, Arndt ;
Bui Quang Minh .
MOLECULAR BIOLOGY AND EVOLUTION, 2015, 32 (01) :268-274
[9]   Maple phylogeny and biogeography inferred from phylogenomic data [J].
Li, Jianhua ;
Stukel, Mark ;
Bussies, Parker ;
Skinner, Kaleb ;
Lemmon, Alan R. ;
Lemmon, Emily Moriarty ;
Brown, Kenneth ;
Bekmetjev, Airat ;
Swenson, Nathan G. .
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2019, 57 (06) :594-606
[10]  
Qin Haining, 2017, Biodiversity Science, V25, P696, DOI 10.17520/biods.2017144