Runs of Homozygosity Do Not Influence Survival to Old Age

被引:9
作者
Kuningas, Maris [1 ]
McQuillan, Ruth [2 ]
Wilson, James F. [2 ]
Hofman, Albert [1 ,3 ]
van Duijn, Cornelia M. [1 ,3 ]
Uitterlinden, Andre G. [1 ,3 ,4 ]
Tiemeier, Henning [1 ,3 ,5 ]
机构
[1] Erasmus Univ, Med Ctr, Dept Epidemiol, Rotterdam, Netherlands
[2] Univ Edinburgh, Ctr Populat Hlth Sci, Edinburgh, Midlothian, Scotland
[3] Netherlands Consortium Healthy Aging, Netherlands Genom Initiat, Leiden, Netherlands
[4] Erasmus Univ, Med Ctr, Dept Internal Med, Rotterdam, Netherlands
[5] Sophia Childrens Univ Hosp, Erasmus Med Ctr, Dept Child & Adolescent Psychiat, Rotterdam, Netherlands
来源
PLOS ONE | 2011年 / 6卷 / 07期
关键词
EXTENDED TRACTS; POPULATIONS; IDENTIFY;
D O I
10.1371/journal.pone.0022580
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Runs of homozygosity (ROH) are extended tracts of adjacent homozygous single nucleotide polymorphisms (SNPs) that are more common in unrelated individuals than previously thought. It has been proposed that estimating ROH on a genome-wide level, by making use of the genome-wide single nucleotide polymorphism (SNP) data, will enable to indentify recessive variants underlying complex traits. Here, we examined ROH larger than 1.5 Mb individually and in combination for association with survival in 5974 participants of the Rotterdam Study. In addition, we assessed the role of overall homozygosity, expressed as a percentage of the autosomal genome that is in ROH longer than 1.5 Mb, on survival during a mean follow-up period of 12 years. None of these measures of homozygosity was associated with survival to old age.
引用
收藏
页数:3
相关论文
共 10 条
  • [1] Extended tracts of homozygosity in outbred human populations
    Gibson, J
    Morton, NE
    Collins, A
    [J]. HUMAN MOLECULAR GENETICS, 2006, 15 (05) : 789 - 795
  • [2] The Rotterdam Study: 2010 objectives and design update
    Hofman, Albert
    Breteler, Monique M. B.
    Duijn, Cornelia M. van
    Janssen, Harry L. A.
    Krestin, Gabriel P.
    Kuipers, Ernst J.
    Stricker, Bruno H. Ch.
    Tiemeier, Henning
    Uitterlinden, Andre G.
    Vingerling, Johannes R.
    Witteman, Jacqueline C. M.
    [J]. EUROPEAN JOURNAL OF EPIDEMIOLOGY, 2009, 24 (09) : 553 - 572
  • [3] Genome-wide homozygosity signatures and childhood acute lymphoblastic leukemia risk
    Hosking, Fay J.
    Papaemmanuil, Elli
    Sheridan, Eammon
    Kinsey, Sally E.
    Lightfoot, Tracy
    Roman, Eve
    Irving, Julie A. E.
    Allan, James M.
    Taylor, Malcolm
    Tomlinson, Ian P.
    Greaves, Mel
    Houlston, Richard S.
    [J]. BLOOD, 2010, 115 (22) : 4472 - 4477
  • [4] Runs of homozygosity reveal highly penetrant recessive loci in schizophrenia
    Lencz, Todd
    Lambert, Christophe
    DeRosse, Pamela
    Burdick, Katherine E.
    Morgan, T. Vance
    Kane, John M.
    Kucherlapati, Raju
    Malhotra, Anil K.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (50) : 19942 - 19947
  • [5] Runs of homozygosity in European populations
    McQuillan, Ruth
    Leutenegger, Anne-Louise
    Abdel-Rahman, Rehab
    Franklin, Christopher S.
    Pericic, Marijana
    Barac-Lauc, Lovorka
    Smolej-Narancic, Nina
    Janicijevic, Branka
    Polasek, Ozren
    Tenesa, Albert
    MacLeod, Andrew K.
    Farrington, Susan M.
    Rudan, Pavao
    Hayward, Caroline
    Vitart, Veronique
    Rudan, Igor
    Wild, Sarah H.
    Dunlop, Malcolm G.
    Wright, Alan F.
    Campbell, Harry
    Wilson, James F.
    [J]. AMERICAN JOURNAL OF HUMAN GENETICS, 2008, 83 (03) : 359 - 372
  • [6] Extended tracts of homozygosity identify novel candidate genes associated with late-onset Alzheimer's disease
    Nalls, M. A.
    Guerreiro, R. J.
    Simon-Sanchez, J.
    Bras, J. T.
    Traynor, B. J.
    Gibbs, J. R.
    Launer, L.
    Hardy, J.
    Singleton, A. B.
    [J]. NEUROGENETICS, 2009, 10 (03) : 183 - 190
  • [7] PLINK: A tool set for whole-genome association and population-based linkage analyses
    Purcell, Shaun
    Neale, Benjamin
    Todd-Brown, Kathe
    Thomas, Lori
    Ferreira, Manuel A. R.
    Bender, David
    Maller, Julian
    Sklar, Pamela
    de Bakker, Paul I. W.
    Daly, Mark J.
    Sham, Pak C.
    [J]. AMERICAN JOURNAL OF HUMAN GENETICS, 2007, 81 (03) : 559 - 575
  • [8] Colorectal Cancer Risk Is Not Associated with Increased Levels of Homozygosity in a Population from the United Kingdom
    Spain, Sarah L.
    Cazier, Jean-Baptiste
    Houlston, Richard
    Carvajal-Carmona, Luis
    Tomlinson, Ian
    [J]. CANCER RESEARCH, 2009, 69 (18) : 7422 - 7429
  • [9] No evidence for excess runs of homozygosity in bipolar disorder
    Vine, Anna E.
    McQuillin, Andrew
    Bass, Nicholas J.
    Pereira, Ana
    Kandaswamy, Radhika
    Robinson, Michele
    Lawrence, Jacob
    Anjorin, Adebayo
    Sklar, Pamela
    Gurling, Hugh M. D.
    Curtis, David
    [J]. PSYCHIATRIC GENETICS, 2009, 19 (04) : 165 - 170
  • [10] Runs of Homozygosity Identify a Recessive Locus 12q21.31 for Human Adult Height
    Yang, Tie-Lin
    Guo, Yan
    Zhang, Li-Shu
    Tian, Qing
    Yan, Han
    Papasian, Christopher J.
    Recker, Robert R.
    Deng, Hong-Wen
    [J]. JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM, 2010, 95 (08) : 3777 - 3782