Ultrafast optical pump-probe studies of the cytochrome b6f complex in solution and crystalline states

被引:3
作者
Dashdorj, Naranbaatar [1 ]
Yamashita, Eiki [2 ]
Schaibley, John [1 ]
Cramer, William A. [2 ]
Savikhin, Sergei [1 ]
机构
[1] Purdue Univ, Dept Phys, W Lafayette, IN 47907 USA
[2] Purdue Univ, Dept Biol Sci, W Lafayette, IN 47907 USA
关键词
D O I
10.1021/jp076536p
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The cytochrome b(6)f complex of oxygenic photosynthesis contains a single chlorophyll a (Chl a) molecule whose function is presently unknown. The singlet excited state of the Chl a molecule is quenched by the surrounding protein matrix, and thus the Chl a molecule in the b(6)f complex may serve as an exceptionally sensitive probe of the protein structure. For the first time, singlet excited-state dynamics were measured in well-diffracting crystals using femtosecond time-resolved optical pump-probe methodology. Lifetimes of the Chl a molecule in crystals of the cytochrome b(6)f complex having different space groups were 3-6 times longer than those determined in detergent solutions of the b(6)f. The observed differences in excited state dynamics may arise from small (1 - 1.5 angstrom) changes in the local protein structure caused by crystal packing. The Chl a excited state lifetimes measured in the dissolved cytochrome b(6)f complexes from several different species are essentially the same, in spite of differences in the local amino acid sequences around the Chl a. This supports an earlier hypothesis that the short excited state lifetime of Chl a is critical for the function of the b(6)f complex.
引用
收藏
页码:14405 / 14410
页数:6
相关论文
共 36 条
[1]   Chromophore conformation and the evolution of tertiary structural changes in photoactive yellow protein [J].
Anderson, S ;
Srajer, V ;
Pahl, R ;
Rajagopal, S ;
Schotte, F ;
Anfinrud, P ;
Wulff, M ;
Moffat, K .
STRUCTURE, 2004, 12 (06) :1039-1045
[2]   Open structures of MurD: Domain movements and structural similarities with folylpolyglutamate synthetase [J].
Bertrand, JA ;
Fanchon, E ;
Martin, L ;
Chantalat, L ;
Auger, G ;
Blanot, D ;
van Heijenoort, J ;
Dideberg, O .
JOURNAL OF MOLECULAR BIOLOGY, 2000, 301 (05) :1257-1266
[3]   Comparison between ultrafast fluorescence dynamics of FMN binding protein from Desulfovibrio vulgaris, strain miyazaki, in solution vs crystal phases [J].
Chosrowjan, Haik ;
Taniguchi, Seiji ;
Mataga, Noboru ;
Tanaka, Fumio ;
Todoroki, Daisuke ;
Kitamura, Masaya .
JOURNAL OF PHYSICAL CHEMISTRY B, 2007, 111 (30) :8695-8697
[4]   Transmembrane traffic in the cytochrome b6f complex [J].
Cramer, William A. ;
Zhang, Huamin ;
Yan, Jiusheng ;
Kurisu, Genji ;
Smith, Janet L. .
ANNUAL REVIEW OF BIOCHEMISTRY, 2006, 75 :769-790
[5]   The single chlorophyll a molecule in the cytochrome b6 f complex:: Unusual optical properties protect the complex against singlet oxygen [J].
Dashdorj, N ;
Zhang, HM ;
Kim, HY ;
Yan, JS ;
Cramer, WA ;
Savikhin, S .
BIOPHYSICAL JOURNAL, 2005, 88 (06) :4178-4187
[6]   Time-resolved microspectroscopy on a single crystal of bacteriorhodopsin reveals lattice-induced differences in the photocycle kinetics [J].
Efremov, R. ;
Gordeliy, V. I. ;
Heberle, J. ;
Bueldt, G. .
BIOPHYSICAL JOURNAL, 2006, 91 (04) :1441-1451
[7]   Comparison of X-ray and NMR structures: Is there a systematic difference in residue contacts between X-ray and NMR-resolved protein structures? [J].
Garbuzynskiy, SO ;
Melnik, BS ;
Lobanov, MY ;
Finkelstein, AV ;
Galzitskaya, OV .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2005, 60 (01) :139-147
[8]   Electron tunneling through proteins [J].
Gray, HB ;
Winkler, JR .
QUARTERLY REVIEWS OF BIOPHYSICS, 2003, 36 (03) :341-372
[9]   REFINED CRYSTAL-STRUCTURES OF SUBTILISIN NOVO IN COMPLEX WITH WILD-TYPE AND 2 MUTANT EGLINS - COMPARISON WITH OTHER SERINE PROTEINASE-INHIBITOR COMPLEXES [J].
HEINZ, DW ;
PRIESTLE, JP ;
RAHUEL, J ;
WILSON, KS ;
GRUTTER, MG .
JOURNAL OF MOLECULAR BIOLOGY, 1991, 217 (02) :353-371
[10]   VARIABILITY OF CONFORMATIONS AT CRYSTAL CONTACTS IN BPTI REPRESENT TRUE LOW-ENERGY STRUCTURES - CORRESPONDENCE AMONG LATTICE PACKING AND MOLECULAR-DYNAMICS STRUCTURES [J].
KOSSIAKOFF, AA ;
RANDAL, M ;
GUENOT, J ;
EIGENBROT, C .
PROTEINS-STRUCTURE FUNCTION AND GENETICS, 1992, 14 (01) :65-74