Machine Learning Approach to Calculate Electronic Couplings between Quasi-diabatic Molecular Orbitals: The Case of DNA

被引:13
|
作者
Bai, Xin [1 ]
Guo, Xin [1 ]
Wang, Linjun [1 ]
机构
[1] Zhejiang Univ, Dept Chem, Key Lab Excited State Mat Zhejiang Prov, Hangzhou 310027, Peoples R China
来源
JOURNAL OF PHYSICAL CHEMISTRY LETTERS | 2021年 / 12卷 / 42期
基金
中国国家自然科学基金;
关键词
CHARGE-TRANSPORT; HOLE TRANSPORT; DYNAMICS; STATES; PARAMETERS; FIELD;
D O I
10.1021/acs.jpclett.1c03053
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Diabatization of one-electron states in flexible molecular aggregates is a great challenge due to the presence of surface crossings between molecular orbital (MO) levels and the complex interaction between MOs of neighboring molecules. In this work, we present an efficient machine learning approach to calculate electronic couplings between quasi-diabatic MOs without the need of nonadiabatic coupling calculations. Using MOs of rigid molecules as references, the MOs that can be directly regarded to be quasi-diabatic in molecular dynamics are selected out, state tracked, and phase corrected. On the basis of this information, artificial neural networks are trained to characterize the structure-dependent onsite energies of quasi-diabatic MOs and the intermolecular electronic couplings. A representative sequence of DNA is systematically studied as an illustration. Smooth time evolution of electronic couplings in all base pairs is obtained with quasi-diabatic MOs. In particular, our method can calculate electronic couplings between different quasi-diabatic MOs independently, and thus, this possesses unique advantages in many applications.
引用
收藏
页码:10457 / 10464
页数:8
相关论文
共 17 条
  • [1] Quasi-diabatic basis versus fixed electronic states in molecular systems
    Mead, C. A.
    XXIST INTERNATIONAL SYMPOSIUM ON THE JAHN-TELLER EFFECT 2012, 2013, 428
  • [2] A fast scheme to calculate electronic couplings between P3HT polymer units using diabatic orbitals for charge transfer dynamics simulations
    Yu, Tao
    Fabunmi, Florence
    Huang, Jingsong
    Sumpter, Bobby G.
    Jakowski, Jacek
    JOURNAL OF COMPUTATIONAL CHEMISTRY, 2019, 40 (02) : 532 - 542
  • [3] A rigorous nonorthogonal configuration interaction approach for the calculation of electronic couplings between diabatic states applied to singlet fission
    Wibowo, Meilani
    Broer, Ria
    Havenith, Remco W. A.
    COMPUTATIONAL AND THEORETICAL CHEMISTRY, 2017, 1116 : 190 - 194
  • [4] Essential diabatic orbital method to calculate electronic couplings between poly-3-hexylthiophene polymer units for charge transfer dynamics simulations
    Yu, Tao
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2019, 257
  • [5] A new implementation of ab initio ehrenfest dynamics using electronic configuration basis: Exact formulation with molecular orbital connection and effective propagation scheme with locally quasi-diabatic representation
    Kunisada, Tomotaka
    Ushiyama, Hiroshi
    Yamashita, Koichi
    INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2016, 116 (16) : 1205 - 1213
  • [6] Machine Learning Prediction of Electronic Coupling between the Guanine Bases of DNA
    Bag, Saientan
    Aggarwal, Abhishek
    Maiti, Prabal K.
    JOURNAL OF PHYSICAL CHEMISTRY A, 2020, 124 (38): : 7658 - 7664
  • [7] Rapid Estimation of the Intermolecular Electronic Couplings and Charge-Carrier Mobilities of Crystalline Molecular Organic Semiconductors through a Machine Learning Pipeline
    Bhat, Vinayak
    Ganapathysubramanian, Baskar
    Risko, Chad
    JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2024, 15 (28): : 7206 - 7213
  • [8] Dependence between Structural and Electronic Properties of CsPbI3: Unsupervised Machine Learning of Nonadiabatic Molecular Dynamics
    Mangan, Spencer M.
    Zhou, Guoqing
    Chu, Weibin
    Prezhdo, Oleg, V
    JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2021, 12 (35): : 8672 - 8678
  • [9] A Machine Learning-Based Correlation Analysis between Driver Behaviour and Vital Signs: Approach and Case Study
    Othman, Walaa
    Hamoud, Batol
    Kashevnik, Alexey
    Shilov, Nikolay
    Ali, Ammar
    SENSORS, 2023, 23 (17)
  • [10] Defining Disease Phenotypes in Primary Care Electronic Health Records by a Machine Learning Approach: A Case Study in Identifying Rheumatoid Arthritis
    Zhou, Shang-Ming
    Fernandez-Gutierrez, Fabiola
    Kennedy, Jonathan
    Cooksey, Roxanne
    Atkinson, Mark
    Denaxas, Spiros
    Siebert, Stefan
    Dixon, William G.
    O'Neill, Terence W.
    Choy, Ernest
    Sudlow, Cathie
    Brophy, Sinead
    PLOS ONE, 2016, 11 (05):