EPR-Based Approach for the Localization of Paramagnetic Metal Ions in Biomolecules

被引:58
作者
Abdullin, Dinar [1 ]
Florin, Nicole [1 ]
Hagelueken, Gregor [1 ]
Schiemann, Olav [1 ]
机构
[1] Univ Bonn, Inst Phys & Theoret Chem, D-53115 Bonn, Germany
关键词
binding sites; copper; EPR spectroscopy; spin labels; triangulation; SPIN-DENSITY DISTRIBUTION; PROTEIN-STRUCTURE; BINDING; RESONANCE; SELECTION; AZURIN; SITES; ELDOR; NMR;
D O I
10.1002/anie.201410396
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Metal ions play an important role in the catalysis and folding of proteins and oligonucleotides. Their localization within the three-dimensional fold of such biomolecules is therefore an important goal in understanding structure-function relationships. A trilateration approach for the localization of metal ions by means of long-range distance measurements based on electron paramagnetic resonance (EPR) is introduced. The approach is tested on the Cu2+ center of azurin, and factors affecting the precision of the method are discussed.
引用
收藏
页码:1827 / 1831
页数:5
相关论文
共 38 条
[1]   Geometric model-based fitting algorithm for orientation-selective PELDOR data [J].
Abdullin, Dinar ;
Hagelueken, Gregor ;
Hunter, Robert I. ;
Smith, Graham M. ;
Schiemann, Olav .
MOLECULAR PHYSICS, 2015, 113 (06) :544-560
[2]   TRANSMEMBRANE PROTEIN-STRUCTURE - SPIN LABELING OF BACTERIORHODOPSIN MUTANTS [J].
ALTENBACH, C ;
MARTI, T ;
KHORANA, HG ;
HUBBELL, WL .
SCIENCE, 1990, 248 (4959) :1088-1092
[3]   The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling [J].
Arnold, K ;
Bordoli, L ;
Kopp, J ;
Schwede, T .
BIOINFORMATICS, 2006, 22 (02) :195-201
[4]   Structure of the Alzheimer's disease amyloid precursor protein copper binding domain - A regulator of neuronal copper homeostasis [J].
Barnham, KJ ;
McKinstry, WJ ;
Multhaup, G ;
Galatis, D ;
Morton, CJ ;
Curtain, CC ;
Williamson, NA ;
White, AR ;
Hinds, MG ;
Norton, RS ;
Beyreuther, K ;
Masters, CL ;
Parker, MW ;
Cappai, R .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (19) :17401-17407
[5]   Perspectives in paramagnetic NMR of metalloproteins [J].
Bertini, Ivano ;
Luchinat, Claudio ;
Parigi, Giacomo ;
Pierattelli, Roberta .
DALTON TRANSACTIONS, 2008, 29 (29) :3782-3790
[6]   PELDOR measurements on a nitroxide-labeled Cu(II) porphyrin: Orientation selection, spin-density distribution, and conformational flexibility [J].
Bode, Bela E. ;
Plackmeyer, Joern ;
Prisner, Thomas F. ;
Schiemann, Olav .
JOURNAL OF PHYSICAL CHEMISTRY A, 2008, 112 (23) :5064-5073
[7]   PELDOR on an exchange coupled nitroxide copper(II) spin pair [J].
Bode, Bela E. ;
Plackmeyer, Joern ;
Bolte, Michael ;
Prisner, Thomas F. ;
Schiemann, Olav .
JOURNAL OF ORGANOMETALLIC CHEMISTRY, 2009, 694 (7-8) :1172-1179
[8]   NMR analysis of protein interactions [J].
Bonvin, AMJJ ;
Boelens, R ;
Kaptein, R .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2005, 9 (05) :501-508
[9]   Pulse Dipolar Electron Spin Resonance: Distance Measurements [J].
Borbat, Peter P. ;
Freed, Jack H. .
STRUCTURAL INFORMATION FROM SPIN-LABELS AND INTRINSIC PARAMAGNETIC CENTRES IN THE BIOSCIENCES, 2014, 152 :1-82
[10]  
Finkelstein J., 2011, HDB METALLOPROTEINS, V4-5