Effect of Protein Environment on Electronically Excited and Ionized States of the Green Fluorescent Protein Chromophore

被引:85
作者
Bravaya, Ksenia B. [1 ]
Khrenova, Maria G. [2 ]
Grigorenko, Bella L. [2 ]
Nemukhin, Alexander V. [2 ,3 ]
Krylov, Anna I. [1 ]
机构
[1] Univ So Calif, Dept Chem, Los Angeles, CA 90089 USA
[2] Moscow MV Lomonosov State Univ, Dept Chem, Moscow 119991, Russia
[3] Russian Acad Sci, NM Emanuel Inst Biochem Phys, Moscow 119334, Russia
基金
美国国家科学基金会; 俄罗斯基础研究基金会;
关键词
REDOX POTENTIALS; DYNAMICS; MECHANISM; ENERGIES; PHENOLS; ANIONS; FORMS; WATER; GFP;
D O I
10.1021/jp2020269
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The effect of the protein environment on the electronic structure of the gas phase green fluorescent protein (GFP) chromophore is investigated by QM/MM (quantum mechanics/molecular mechanics) calculations. The protein has very small effect on the excitation energy of the bright absorbing and the lowest triplet states of the anionic GFP chromophore, deprotonated 4-hydroxybenzylidene-2,3-dimethylimidazolinone (HBDI) anion, however, it increases vertical detachment energy from 2.5 eV (gas-phase deprotonated HBDI anion) to 5.0 eV (solvated protein). We also investigated possible existence of the charge-transfer-to-solvent (CTTS) states associated with the GFP chromophore. Although precursors of such states appear in cluster calculations, a tightly packed structure of the protein prevents the formation of the CTTS states in this system. Motivated by a recently discovered new type of photoconversion, oxidative redding, we characterized the redox properties of GFP. The computed standard reduction potential of the anionic form of GFP is 0.47 V (for the GFP(center dot) + le -> GFP(-) reaction), and the reduction potential at physiological conditions (pH 7, T = 25 degrees C) is 0.06 V.
引用
收藏
页码:8296 / 8303
页数:8
相关论文
共 66 条
[41]   Excited state reactions in fluorescent proteins [J].
Meech, Stephen R. .
CHEMICAL SOCIETY REVIEWS, 2009, 38 (10) :2922-2934
[42]   Computer Modeling of the Structure and Spectra of Fluorescent Proteins [J].
Nemukhin, A. V. ;
Grigorenko, B. L. ;
Savitsky, A. P. .
ACTA NATURAE, 2009, 1 (02) :33-43
[43]   Flexible effective fragment QM/MM method: Validation through the challenging tests [J].
Nemukhin, AV ;
Grigorenko, BL ;
Topol, IA ;
Burt, SK .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2003, 24 (12) :1410-1420
[44]   Absorption spectrum of the green fluorescent protein chromophore anion in vacuo -: art. no. 228102 [J].
Nielsen, SB ;
Lapierre, A ;
Andersen, JU ;
Pedersen, UV ;
Tomita, S ;
Andersen, LH .
PHYSICAL REVIEW LETTERS, 2001, 87 (22) :228102/1-228102/4
[45]  
Ormo M, 1996, SCIENCE, V273, P1392, DOI 10.1126/science.273.5280.1392
[46]   Scalable molecular dynamics with NAMD [J].
Phillips, JC ;
Braun, R ;
Wang, W ;
Gumbart, J ;
Tajkhorshid, E ;
Villa, E ;
Chipot, C ;
Skeel, RD ;
Kalé, L ;
Schulten, K .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2005, 26 (16) :1781-1802
[47]   Potential Energy Landscape of the Electronic States of the GFP Chromophore in Different Protonation Forms: Electronic Transition Energies and Conical Intersections [J].
Polyakov, I. V. ;
Grigorenko, B. L. ;
Epifanovsky, E. M. ;
Krylov, A. I. ;
Nemukhin, A. V. .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2010, 6 (08) :2377-2387
[48]   Quantification of Photosensitized Singlet Oxygen Production by a Fluorescent Protein [J].
Ragas, Xavier ;
Cooper, Laurie P. ;
White, John H. ;
Nonell, Santi ;
Flors, Cristina .
CHEMPHYSCHEM, 2011, 12 (01) :161-165
[49]   Photoabsorption studies of neutral green fluorescent protein model chromophores in vacuo [J].
Rajput, J. ;
Rahbek, D. B. ;
Andersen, L. H. ;
Rocha-Rinza, T. ;
Christiansen, O. ;
Bravaya, K. B. ;
Erokhin, A. V. ;
Bochenkova, A. V. ;
Solntsev, K. M. ;
Dong, J. ;
Kowalik, J. ;
Tolbert, L. M. ;
Petersen, M. Axman ;
Nielsen, M. Brondsted .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2009, 11 (43) :9996-10002
[50]   Scaled second-order perturbation corrections to configuration interaction singles: Efficient and reliable excitation energy methods [J].
Rhee, Young Min ;
Head-Gordon, Martin .
JOURNAL OF PHYSICAL CHEMISTRY A, 2007, 111 (24) :5314-5326