Effect of Protein Environment on Electronically Excited and Ionized States of the Green Fluorescent Protein Chromophore

被引:85
作者
Bravaya, Ksenia B. [1 ]
Khrenova, Maria G. [2 ]
Grigorenko, Bella L. [2 ]
Nemukhin, Alexander V. [2 ,3 ]
Krylov, Anna I. [1 ]
机构
[1] Univ So Calif, Dept Chem, Los Angeles, CA 90089 USA
[2] Moscow MV Lomonosov State Univ, Dept Chem, Moscow 119991, Russia
[3] Russian Acad Sci, NM Emanuel Inst Biochem Phys, Moscow 119334, Russia
基金
美国国家科学基金会; 俄罗斯基础研究基金会;
关键词
REDOX POTENTIALS; DYNAMICS; MECHANISM; ENERGIES; PHENOLS; ANIONS; FORMS; WATER; GFP;
D O I
10.1021/jp2020269
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The effect of the protein environment on the electronic structure of the gas phase green fluorescent protein (GFP) chromophore is investigated by QM/MM (quantum mechanics/molecular mechanics) calculations. The protein has very small effect on the excitation energy of the bright absorbing and the lowest triplet states of the anionic GFP chromophore, deprotonated 4-hydroxybenzylidene-2,3-dimethylimidazolinone (HBDI) anion, however, it increases vertical detachment energy from 2.5 eV (gas-phase deprotonated HBDI anion) to 5.0 eV (solvated protein). We also investigated possible existence of the charge-transfer-to-solvent (CTTS) states associated with the GFP chromophore. Although precursors of such states appear in cluster calculations, a tightly packed structure of the protein prevents the formation of the CTTS states in this system. Motivated by a recently discovered new type of photoconversion, oxidative redding, we characterized the redox properties of GFP. The computed standard reduction potential of the anionic form of GFP is 0.47 V (for the GFP(center dot) + le -> GFP(-) reaction), and the reduction potential at physiological conditions (pH 7, T = 25 degrees C) is 0.06 V.
引用
收藏
页码:8296 / 8303
页数:8
相关论文
共 66 条
  • [1] Toward reliable density functional methods without adjustable parameters: The PBE0 model
    Adamo, C
    Barone, V
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1999, 110 (13) : 6158 - 6170
  • [2] Density functional theory based effective fragment potential method
    Adamovic, I
    Freitag, MA
    Gordon, MS
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2003, 118 (15) : 6725 - 6732
  • [3] Chromophores of the green fluorescent protein studied in the gas phase
    Andersen, LH
    Lapierre, A
    Nielsen, SB
    Nielsen, IB
    Pedersen, SU
    Pedersen, UV
    Tomita, S
    [J]. EUROPEAN PHYSICAL JOURNAL D, 2002, 20 (03) : 597 - 600
  • [4] Pulse radiolysis of supercritical water. 3. Spectrum and thermodynamics of the hydrated electron
    Bartels, DM
    Takahashi, K
    Cline, JA
    Marin, TW
    Jonah, CD
    [J]. JOURNAL OF PHYSICAL CHEMISTRY A, 2005, 109 (07) : 1299 - 1307
  • [5] Light-driven decarboxylation of wild-type green fluorescent protein
    Bell, AF
    Stoner-Ma, D
    Wachter, RM
    Tonge, PJ
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2003, 125 (23) : 6919 - 6926
  • [6] THEORY AND APPLICATIONS OF CHARGE-TRANSFER-TO-SOLVENT SPECTRA
    BLANDAMER, MJ
    FOX, MF
    [J]. CHEMICAL REVIEWS, 1970, 70 (01) : 59 - +
  • [7] Green fluorescent proteins are light-induced electron donors
    Bogdanov, Alexey M.
    Mishin, Alexander S.
    Yampolsky, Ilia V.
    Belousov, Vsevolod V.
    Chudakov, Dmitriy M.
    Subach, Fedor V.
    Verkhusha, Vladislav V.
    Lukyanov, Sergey
    Lukyanov, Konstantin A.
    [J]. NATURE CHEMICAL BIOLOGY, 2009, 5 (07) : 459 - 461
  • [8] Excited states of iodide anions in water: A comparison of the electronic structure in clusters and in bulk solution
    Bradforth, SE
    Jungwirth, P
    [J]. JOURNAL OF PHYSICAL CHEMISTRY A, 2002, 106 (07) : 1286 - 1298
  • [9] The effect of π-stacking, H-bonding, and electrostatic interactions on the ionization energies of nucleic acid bases: adenine-adenine, thymine-thymine and adenine-thymine dimers
    Bravaya, Ksenia B.
    Kostko, Oleg
    Ahmed, Musahid
    Krylov, Anna I.
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2010, 12 (10) : 2292 - 2307
  • [10] Case D.A., 2004, AMBER 8