Human IRGM gene "to be or not to be"

被引:34
作者
Bekpen, Cemaletin [4 ,5 ]
Xavier, Ramnik J. [1 ,2 ,3 ]
Eichler, Evan E. [4 ,5 ]
机构
[1] Broad Inst MIT & Harvard, Cambridge, MA USA
[2] Harvard Univ, Massachusetts Gen Hosp, Sch Med, Ctr Computat & Integrat Biol, Boston, MA USA
[3] Harvard Univ, Massachusetts Gen Hosp, Sch Med, Gastrointestinal Unit, Boston, MA USA
[4] Howard Hughes Med Inst, Seattle, WA USA
[5] Univ Washington, Dept Genome Sci, Seattle, WA 98195 USA
关键词
Human IRGM gene; IRG gene family; Autophagy; Crohn's disease; Innate immunity; Genome-wide association studies; Evolution of IRGM; Death and resurrection of a gene; CROHNS-DISEASE SUSCEPTIBILITY; GENOME-WIDE ASSOCIATION; IFN-GAMMA; ENDOGENOUS RETROVIRUS; TOXOPLASMA-GONDII; P47; GTPASES; INTRACELLULAR PATHOGENS; EVOLUTIONARY HISTORY; ULCERATIVE-COLITIS; RESISTANCE GTPASES;
D O I
10.1007/s00281-010-0224-x
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
The immunity-related GTPases (IRG proteins) are one of the strongest early resistance systems against intracellular pathogens. The IRG gene family contains 21 copies arranged as tandem gene clusters on two chromosomes in the C57BL/6 mouse genome but has been reduced to only two copies in humans: IRGC and IRGM. IRGC is not involved in immunity, but the human IRGM gene plays a role in autophagy-targeted destruction of Mycobacterium tuberculosis (BCG) and Salmonella typhimurium. Variant IRGM haplotypes have been associated with increased risk for Crohn's disease and correlated with differential expression of IRGM transcripts. This article reviews in detail the studies performed on human samples, in vitro, and in sequence analyses that provide evidence for the unusual evolutionary history of the IRGM locus and the important role of the IRGM gene in autophagy and Crohn's disease in response to pathogenesis.
引用
收藏
页码:437 / 444
页数:8
相关论文
共 68 条
  • [1] The evolutionary dynamics of human endogenous retroviral families
    Bannert, Norbert
    Kurth, Reinhard
    [J]. ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, 2006, 7 : 149 - 173
  • [2] Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease
    Barrett, Jeffrey C.
    Hansoul, Sarah
    Nicolae, Dan L.
    Cho, Judy H.
    Duerr, Richard H.
    Rioux, John D.
    Brant, Steven R.
    Silverberg, Mark S.
    Taylor, Kent D.
    Barmada, M. Michael
    Bitton, Alain
    Dassopoulos, Themistocles
    Datta, Lisa Wu
    Green, Todd
    Griffiths, Anne M.
    Kistner, Emily O.
    Murtha, Michael T.
    Regueiro, Miguel D.
    Rotter, Jerome I.
    Schumm, L. Philip
    Steinhart, A. Hillary
    Targan, Stephan R.
    Xavier, Ramnik J.
    Libioulle, Cecile
    Sandor, Cynthia
    Lathrop, Mark
    Belaiche, Jacques
    Dewit, Olivier
    Gut, Ivo
    Heath, Simon
    Laukens, Debby
    Mni, Myriam
    Rutgeerts, Paul
    Van Gossum, Andre
    Zelenika, Diana
    Franchimont, Denis
    Hugot, Jean-Pierre
    de Vos, Martine
    Vermeire, Severine
    Louis, Edouard
    Cardon, Lon R.
    Anderson, Carl A.
    Drummond, Hazel
    Nimmo, Elaine
    Ahmad, Tariq
    Prescott, Natalie J.
    Onnie, Clive M.
    Fisher, Sheila A.
    Marchini, Jonathan
    Ghori, Jilur
    [J]. NATURE GENETICS, 2008, 40 (08) : 955 - 962
  • [3] The interferon-inducible p47 (IRG) GTPases in vertebrates: loss of the cell autonomous resistance mechanism in the human lineage
    Bekpen, C
    Hunn, JP
    Rohde, C
    Parvanova, I
    Guethlein, L
    Dunn, DM
    Glowalla, E
    Leptin, M
    Howard, JC
    [J]. GENOME BIOLOGY, 2005, 6 (11)
  • [4] Death and Resurrection of the Human IRGM Gene
    Bekpen, Cemalettin
    Marques-Bonet, Tomas
    Alkan, Can
    Antonacci, Francesca
    Leogrande, Maria Bruna
    Ventura, Mario
    Kidd, Jeffrey M.
    Siswara, Priscillia
    Howard, Jonathan C.
    Eichler, Evan E.
    [J]. PLOS GENETICS, 2009, 5 (03):
  • [5] The p47 GTPases Igtp and Irgb10 map to the Chlamydia trachomatis susceptibility locus Ctrq-3 and mediate cellular resistance in mice
    Bernstein-Hanley, Isaac
    Coers, Jorn
    Balsara, Zarine R.
    Taylor, Gregory A.
    Starnbach, Michael N.
    Dietrich, William F.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (38) : 14092 - 14097
  • [6] Boehm U, 1998, J IMMUNOL, V161, P6715
  • [7] A key role for autophagy and the autophagy gene Atg16l1 in mouse and human intestinal Paneth cells
    Cadwell, Ken
    Liu, John Y.
    Brown, Sarah L.
    Miyoshi, Hiroyuki
    Loh, Joy
    Lennerz, Jochen K.
    Kishi, Chieko
    Kc, Wumesh
    Carrero, Javier A.
    Hunt, Steven
    Stone, Christian D.
    Brunt, Elizabeth M.
    Xavier, Ramnik J.
    Sleckman, Barry P.
    Li, Ellen
    Mizushima, Noboru
    Stappenbeck, Thaddeus S.
    Virgin, Herbert W.
    [J]. NATURE, 2008, 456 (7219) : 259 - U62
  • [8] The nonsense-mediated decay RNA surveillance pathway
    Chang, Yao-Fu
    Imam, J. Saadi
    Wilkinson, Miles E.
    [J]. ANNUAL REVIEW OF BIOCHEMISTRY, 2007, 76 : 51 - 74
  • [9] Inactivation of LRG-47 and IRG-47 reveals a family of interferon γ-inducible genes with essential, pathogen-specific roles in resistance to infection
    Collazo, CM
    Yap, GS
    Sempowski, GD
    Lusby, KC
    Tessarollo, L
    Woude, GFV
    Sher, A
    Taylor, GA
    [J]. JOURNAL OF EXPERIMENTAL MEDICINE, 2001, 194 (02) : 181 - 187
  • [10] Nonsense-mediated mRNA decay: molecular insights and mechanistic variations across species
    Conti, E
    Izaurralde, E
    [J]. CURRENT OPINION IN CELL BIOLOGY, 2005, 17 (03) : 316 - 325