Protein ligand migration mapped by nonequilibrium 2D-IR exchange spectroscopy

被引:81
|
作者
Bredenbeck, Jens
Helbing, Jan
Nienhaus, Karin
Nienhaus, G. Ulrich
Hamm, Peter
机构
[1] Univ Ulm, Inst Biophys, D-89081 Ulm, Germany
[2] Univ Zurich, Inst Phys Chem, CH-8057 Zurich, Switzerland
[3] Univ Illinois, Dept Phys, Urbana, IL 61801 USA
关键词
ligand binding; myoglobin; chemical exchange; infrared spectroscopy;
D O I
10.1073/pnas.0607758104
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
2D-IR exchange spectroscopy has been introduced recently to map chemical exchange networks in equilibrium with subpicosecond time resolution. Here, we demonstrate the generalization of 2D-IR exchange spectroscopy to nonequilibrium systems and its application to map light-triggered migration of ligands between different sites in a protein. Within picoseconds after a photodissociating laser pulse, carbon monoxide ligands relocate from their binding site A at the heme prosthetic group of myoglobin to a primary docking site B in the distal heme pocket. Multiple CO stretching bands are observed for the CO ligand in sites A and B, indicating that several distinct conformational substates of the myoglobin: ligand complex coexist in solution. Exchange cross-peaks between the bands associated with sub-states of heme-bound CO and photodissociated CO in the primary docking site reveal the substate connectivity at physiological temperature.
引用
收藏
页码:14243 / 14248
页数:6
相关论文
共 50 条
  • [1] Nonequilibrium 2D-IR exchange spectroscopy: Ligand migration in proteins
    Bredenbeck, J.
    Helbing, J.
    Nienhaus, K.
    Nienhaus, G. U.
    Hamm, P.
    ULTRAFAST PHENOMENA XV, 2007, 88 : 377 - +
  • [2] 2D-IR spectroscopy of transient species
    Bredenbeck, J
    Helbing, J
    Hamm, P
    ULTRAFAST PHENOMENA XIV, 2005, 79 : 542 - 544
  • [3] 2D-IR spectroscopy of electronic materials
    Eigner, Audrey A.
    Massari, Aaron M.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2009, 238
  • [4] Transient 2D-IR spectroscopy of Thiopeptides
    Helbing, Jan
    Cervetto, Valentina
    Pfister, Rolf
    ULTRAFAST PHENOMENA XV, 2007, 88 : 374 - +
  • [5] Ultrafast 2D-IR spectroscopy of haemoproteins
    Simpson, N.
    Hunt, N. T.
    INTERNATIONAL REVIEWS IN PHYSICAL CHEMISTRY, 2015, 34 (03) : 361 - 383
  • [6] Ultrafast 2D-IR spectroscopy of a molecular monolayer
    Bredenbeck, Jens
    Ghosh, Avishek
    Smits, Marc
    Bonn, Mischa
    ULTRAFAST PHENOMENA XVI, 2009, 92 : 511 - 513
  • [7] Biofluid analysis and classification using IR and 2D-IR spectroscopy
    Rutherford, Samantha H.
    Nordon, Alison
    Hunt, Neil T.
    Baker, Matthew J.
    CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS, 2021, 217
  • [8] Ultrafast 2D-IR Spectroscopy of transient species
    Bredenbeck, Jens
    Helbing, Jan
    Kolano, Christoph
    Hamm, Peter
    CHEMPHYSCHEM, 2007, 8 (12) : 1747 - 1756
  • [9] Advancing the sensitivity and selectivity of 2D-IR spectroscopy
    Zhang, Wenkai
    Markiewicz, Beatrice
    Chen, Jianxin
    Gai, Feng
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2016, 252
  • [10] Difference 2D-IR spectroscopy on the chromophore in bacteriorhodopsin
    Andresen, Esben Ravn
    Helbing, Jan
    Hamm, Peter
    ULTRAFAST PHENOMENA XVI, 2009, 92 : 427 - 429