Protein ligand migration mapped by nonequilibrium 2D-IR exchange spectroscopy

被引:81
作者
Bredenbeck, Jens
Helbing, Jan
Nienhaus, Karin
Nienhaus, G. Ulrich
Hamm, Peter
机构
[1] Univ Ulm, Inst Biophys, D-89081 Ulm, Germany
[2] Univ Zurich, Inst Phys Chem, CH-8057 Zurich, Switzerland
[3] Univ Illinois, Dept Phys, Urbana, IL 61801 USA
关键词
ligand binding; myoglobin; chemical exchange; infrared spectroscopy;
D O I
10.1073/pnas.0607758104
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
2D-IR exchange spectroscopy has been introduced recently to map chemical exchange networks in equilibrium with subpicosecond time resolution. Here, we demonstrate the generalization of 2D-IR exchange spectroscopy to nonequilibrium systems and its application to map light-triggered migration of ligands between different sites in a protein. Within picoseconds after a photodissociating laser pulse, carbon monoxide ligands relocate from their binding site A at the heme prosthetic group of myoglobin to a primary docking site B in the distal heme pocket. Multiple CO stretching bands are observed for the CO ligand in sites A and B, indicating that several distinct conformational substates of the myoglobin: ligand complex coexist in solution. Exchange cross-peaks between the bands associated with sub-states of heme-bound CO and photodissociated CO in the primary docking site reveal the substate connectivity at physiological temperature.
引用
收藏
页码:14243 / 14248
页数:6
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