RNA Modifications in Pathogenic Bacteria: Impact on Host Adaptation and Virulence

被引:22
作者
Antoine, Laura [1 ]
Bahena-Ceron, Roberto [1 ]
Bunwaree, Heemee Devi [1 ]
Gobry, Martin [1 ]
Loegler, Victor [1 ]
Romby, Pascale [1 ]
Marzi, Stefano [1 ]
机构
[1] Univ Strasbourg, Architecture & Reactivite ARN, CNRS, UPR 9002, F-67000 Strasbourg, France
关键词
RNA modifications; pathogenic bacteria; host-adaptation; stress adaptation; ribosomal RNA; tRNA; small non-coding RNA; mRNA; 16S RIBOSOMAL-RNA; MODIFICATION ENZYMES GIDA; MESSENGER-RNA; ESCHERICHIA-COLI; GENE-EXPRESSION; POSTTRANSCRIPTIONAL MODIFICATIONS; TRANSLATION INITIATION; MODIFIED NUCLEOTIDES; CRYSTAL-STRUCTURE; RO AUTOANTIGEN;
D O I
10.3390/genes12081125
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
RNA modifications are involved in numerous biological processes and are present in all RNA classes. These modifications can be constitutive or modulated in response to adaptive processes. RNA modifications play multiple functions since they can impact RNA base-pairings, recognition by proteins, decoding, as well as RNA structure and stability. However, their roles in stress, environmental adaptation and during infections caused by pathogenic bacteria have just started to be appreciated. With the development of modern technologies in mass spectrometry and deep sequencing, recent examples of modifications regulating host-pathogen interactions have been demonstrated. They show how RNA modifications can regulate immune responses, antibiotic resistance, expression of virulence genes, and bacterial persistence. Here, we illustrate some of these findings, and highlight the strategies used to characterize RNA modifications, and their potential for new therapeutic applications.
引用
收藏
页数:23
相关论文
共 234 条
[91]   Detecting RNA modifications in the epitranscriptome: predict and validate [J].
Helm, Mark ;
Motorin, Yuri .
NATURE REVIEWS GENETICS, 2017, 18 (05) :275-291
[92]   Posttranscriptional RNA Modifications: Playing Metabolic Games in a Cell's Chemical Legoland [J].
Helm, Mark ;
Alfonzo, Juan D. .
CHEMISTRY & BIOLOGY, 2014, 21 (02) :174-185
[93]   MECHANISM OF KASUGAMYCIN RESISTANCE IN ESCHERICHIA-COLI [J].
HELSER, TL ;
DAHLBERG, JE ;
DAVIES, JE .
NATURE-NEW BIOLOGY, 1972, 235 (53) :6-&
[94]  
Herzog VA, 2017, NAT METHODS, V14, P1198, DOI [10.1038/NMETH.4435, 10.1038/nmeth.4435]
[95]   Drugging tRNA aminoacylation [J].
Ho, Joanne M. ;
Bakkalbasi, Erol ;
Soll, Dieter ;
Miller, Corwin A. .
RNA BIOLOGY, 2018, 15 (4-5) :667-677
[96]  
HO NWY, 1971, BIOCHEMISTRY-US, V10, P3651
[97]   An RNA Repair Operon Regulated by Damaged tRNAs [J].
Hughes, Kevin J. ;
Chen, Xinguo ;
Burroughs, A. Maxwell ;
Aravind, L. ;
Wolin, Sandra L. .
CELL REPORTS, 2020, 33 (12)
[98]   NSun2-Mediated Cytosine-5 Methylation of Vault Noncoding RNA Determines Its Processing into Regulatory Small RNAs [J].
Hussain, Shobbir ;
Sajini, Abdulrahim A. ;
Blanco, Sandra ;
Dietmann, Sabine ;
Lombard, Patrick ;
Sugimoto, Yoichiro ;
Paramor, Maike ;
Gleeson, Joseph G. ;
Odom, Duncan T. ;
Ule, Jernej ;
Frye, Michaela .
CELL REPORTS, 2013, 4 (02) :255-261
[99]   N6-Methyladenosines in mRNAs reduce the accuracy of codon reading by transfer RNAs and peptide release factors [J].
Ieong, Ka-Weng ;
Indrisiunaite, Gabriele ;
Prabhakar, Arjun ;
Puglisi, Joseph D. ;
Ehrenberg, Mans .
NUCLEIC ACIDS RESEARCH, 2021, 49 (05) :2684-2699