A new approach for microscopic diagnosis of malaria parasites in thick blood smears using pre-trained deep learning models

被引:28
作者
Nakasi, Rose [1 ]
Mwebaze, Ernest [2 ]
Zawedde, Aminah [1 ]
Tusubira, Jeremy [1 ]
Akera, Benjamin [1 ]
Maiga, Gilbert [1 ]
机构
[1] Makerere Univ, Coll Comp & Informat Sci, Kampala, Uganda
[2] Makerere Al Res, Kampala, Uganda
来源
SN APPLIED SCIENCES | 2020年 / 2卷 / 07期
关键词
Deep learning; Malaria detection; Thick blood smear; Mobile detector;
D O I
10.1007/s42452-020-3000-0
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
One of the deadly endemic diseases in sub-Saharan Africa is malaria. Its prevalence is promoted by lack of sufficient expertise to carry out accurate and timely diagnosis using the standard microscopy method. Where lab technicians are available, the results are usually subjective due to variations in expert judgement. To address this challenge, prompt interventions to improve disease control are needed. The emerging technologies of machine learning that can learn complex image patterns have accelerated research in medical image analysis. In this study, on a dataset of thick blood smear images, we evaluate and compare performance of three pre-trained deep learning architectures namely; faster regional convolutional neural network (faster R-CNN), single-shot multi-box detector (SSD) and RetinaNet through a Tensorflow object detection API. Data augmentation method was applied to optimise performance of the meta architectures. The possibility for mobile phone detector deployment was also investigated. The results revealed that faster R-CNN was the best trained model with a mean average precision of over 0.94 and SSD, was the best model for mobile deployment. We therefore deduce that faster R-CNN is best suited for obtaining high rates of accuracy in malaria detection while SDD is best suited for mobile deployment.
引用
收藏
页数:7
相关论文
共 26 条
[11]  
GoogleAI, 2019, TENS OBJ DET PREPR
[12]  
GoogleInc, 2019, TENS
[13]  
Lin T, 2018, ARXIV170802002V2CSCV, P7
[14]   SSD: Single Shot MultiBox Detector [J].
Liu, Wei ;
Anguelov, Dragomir ;
Erhan, Dumitru ;
Szegedy, Christian ;
Reed, Scott ;
Fu, Cheng-Yang ;
Berg, Alexander C. .
COMPUTER VISION - ECCV 2016, PT I, 2016, 9905 :21-37
[15]  
Ministry of Health U, 2016, MAL CONTR B, V1
[16]  
Najafabadi MM., 2015, Journal of big data, V2, P1
[17]   Image analysis and machine learning for detecting malaria [J].
Poostchi, Mahdieh ;
Silamut, Kamolrat ;
Maude, Richard J. ;
Jaeger, Stefan ;
Thoma, George .
TRANSLATIONAL RESEARCH, 2018, 194 :36-55
[18]  
Quinn J, 2016, P INT C MACH LEARN H, V50
[19]   Pre-trained convolutional neural networks as feature extractors toward improved malaria parasite detection in thin blood smear images [J].
Rajaraman, Sivaramakrishnan ;
Antani, Sameer K. ;
Poostchi, Mahdieh ;
Silamut, Kamolrat ;
Hossain, Md. A. ;
Maude, Richard J. ;
Jaeger, Stefan ;
Thoma, George R. .
PEERJ, 2018, 6
[20]   CNN Features off-the-shelf: an Astounding Baseline for Recognition [J].
Razavian, Ali Sharif ;
Azizpour, Hossein ;
Sullivan, Josephine ;
Carlsson, Stefan .
2014 IEEE CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION WORKSHOPS (CVPRW), 2014, :512-519