Spectral water transparency and phytoplankton light absorbance were studied in the Atlantic sector of the Southern Ocean during the Southern Ocean JGOFS ANT XIII/2 cruise in early austral summer 1995/1996. The study area comprised three zones, which differed markedly with respect to their hydrographic and planktological characteristics: the Antarctic Polar Frontal Zone with adiatom bloom, the Antarctic Circumpolar Current outside frontal systems with phytoplankton-poor water and a higher flagellate abundance than in the other two areas, and the marginal ice zone with a Phaeocystis bloom. The influence of phytoplankton on spectral water transparency was assessed by two independent procedures: the pigment-specific beam absorption coefficient, a(phi)*[lambda], at all stations, as estimated by spectroscopy of in vivo light absorption of plankton on glass fibre filters, and the pigment-specific light attenuation, (k(C)[lambda]), as derived by regression analysis of spectral in situ vertical light attenuation coefficients in the sea against concomitant pigment concentrations. Values of a phi*[lambda] and vertical profiles of light attenuation by phytoplankton exhibited regional differences that corresponded with the three zones from which samples a been collected. These differences can be related to the specific characteristics of the three zones with respect to cell size distribution, pigment composition and biomass. The observed variations in a phi*[lambda] values should be considered when oceanic primary production is to be estimated by biooptical modelling.