Structural stability studies in adhesion molecules-role of cation-π interactions

被引:7
作者
Sophiya, K. [1 ]
Anbarasu, Anand [1 ]
机构
[1] VIT Univ, Sch Biosci & Technol, Bioinformat Div, Vellore 632014, Tamil Nadu, India
关键词
Adhesion molecules; Cation-pi interactions; Secondary structure; Conservation patterns; Stabilization centers; PROTEIN SECONDARY STRUCTURE; DIFFERENT FOLDING TYPES; STABILIZATION CENTERS; NONLOCAL INTERACTIONS; STRUCTURE PREDICTION; AMINO-ACIDS; IDENTIFICATION; DATABASE; RESIDUES; DETERMINES;
D O I
10.1007/s00709-010-0224-7
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Cell adhesion molecules are important for their various roles in many cellular events and responses. In the present study, we have analyzed the roles played by cation-pi interactions in the structural stability of adhesion molecules. These interactions are mainly formed by long-range contacts. The occurrence of arginine is higher than lysine to form cation-pi interactions. The secondary structure preferences of interacting residues are independent of amino acid class. Cation-pi interactions might stabilize the interface between the terminus and core in this class of proteins. The results obtained in the present study will be useful in understanding the contribution of cation-pi interactions to the overall stability of adhesion proteins.
引用
收藏
页码:673 / 682
页数:10
相关论文
共 56 条
  • [1] ALBELDA SM, 1993, LAB INVEST, V68, P4
  • [2] INTEGRINS AND OTHER CELL-ADHESION MOLECULES
    ALBELDA, SM
    BUCK, CA
    [J]. FASEB JOURNAL, 1990, 4 (11) : 2868 - 2880
  • [3] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    Altschul, SF
    Madden, TL
    Schaffer, AA
    Zhang, JH
    Zhang, Z
    Miller, W
    Lipman, DJ
    [J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (17) : 3389 - 3402
  • [4] Exploring the role of cation-π interactions in glycoproteins lipid-binding proteins and RNA-binding proteins
    Anbarasu, Anand
    Sethumadhavan, Rao
    [J]. JOURNAL OF THEORETICAL BIOLOGY, 2007, 247 (02) : 346 - 353
  • [5] [Anonymous], 1978, ADV ENZYMOLOGY RELAT
  • [6] [Anonymous], 2005, PRINCIPLES BIOCH
  • [7] Energetics of protein folding
    Baldwin, Robert L.
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2007, 371 (02) : 283 - 301
  • [8] The Protein Data Bank
    Berman, HM
    Westbrook, J
    Feng, Z
    Gilliland, G
    Bhat, TN
    Weissig, H
    Shindyalov, IN
    Bourne, PE
    [J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 235 - 242
  • [9] Adhesion molecules and atherosclerosis
    Blankenberg, S
    Barbaux, S
    Tiret, L
    [J]. ATHEROSCLEROSIS, 2003, 170 (02) : 191 - 203
  • [10] The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
    Boeckmann, B
    Bairoch, A
    Apweiler, R
    Blatter, MC
    Estreicher, A
    Gasteiger, E
    Martin, MJ
    Michoud, K
    O'Donovan, C
    Phan, I
    Pilbout, S
    Schneider, M
    [J]. NUCLEIC ACIDS RESEARCH, 2003, 31 (01) : 365 - 370