Angiogenesis-Related Gene Signature-Derived Risk Score for Glioblastoma: Prospects for Predicting Prognosis and Immune Heterogeneity in Glioblastoma

被引:8
作者
Wang, Gang [1 ]
Hu, Jin-Qu [1 ]
Liu, Ji-Yuan [1 ]
Zhang, Xiao-Mei [2 ]
机构
[1] China Med Univ, Affiliated Hosp 1, Dept Neurosurg, Shenyang, Peoples R China
[2] China Med Univ, ShengJing Hosp, Dept Rheumatol & Immunol, Shenyang, Peoples R China
来源
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY | 2022年 / 10卷
关键词
glioblastoma; angiogenesis; gene signature; prognostic model; risk score; UROKINASE PLASMINOGEN-ACTIVATOR; PLASMACYTOID DENDRITIC CELLS; TUMOR ANGIOGENESIS; I-INTERFERON; RECEPTOR; SYSTEM; PLUS; UPAR; FIBROMODULIN; BEVACIZUMAB;
D O I
10.3389/fcell.2022.778286
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Background: Glioblastoma multiforme (GBM) is the most common malignant tumor in the central nervous system with poor prognosis and unsatisfactory therapeutic efficacy. Considering the high correlation between tumors and angiogenesis, we attempted to construct a more effective model with angiogenesis-related genes (ARGs) to better predict therapeutic response and prognosis.Methods: The ARG datasets were downloaded from the NCBI-Gene and Molecular Signatures Database. The gene expression data and clinical information were obtained from TCGA and CGGA databases. The differentially expressed angiogenesis-related genes (DE-ARGs) were screened with the R package "DESeq2". Univariate Cox proportional hazards regression analysis was used to screen for ARGs related to overall survival. The redundant ARGs were removed by least absolute shrinkage and selection operator (LASSO) regression analysis. Based on the gene signature of DE-ARGs, a risk score model was established, and its effectiveness was estimated through Kaplan-Meier analysis, ROC analysis, etc.Results: A total of 626 DE-ARGs were explored between GBM and normal samples; 31 genes were identified as key DE-ARGs. Then, the risk score of ARG signature was established. Patients with high-risk score had poor survival outcomes. It was proved that the risk score could predict some medical treatments' response, such as temozolomide chemotherapy, radiotherapy, and immunotherapy. Besides, the risk score could serve as a promising prognostic predictor. Three key prognostic genes (PLAUR, ITGA5, and FMOD) were selected and further discussed.Conclusion: The angiogenesis-related gene signature-derived risk score is a promising predictor of prognosis and treatment response in GBM and will help in making appropriate therapeutic strategies.
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页数:16
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共 55 条
  • [1] Tumor Development and Angiogenesis in Adult Brain Tumor: Glioblastoma
    Ahir, Bhavesh K.
    Engelhard, Herbert H.
    Lakka, Sajani S.
    [J]. MOLECULAR NEUROBIOLOGY, 2020, 57 (05) : 2461 - 2478
  • [2] Contribution to Tumor Angiogenesis From Innate Immune Cells Within the Tumor Microenvironment: Implications for Immunotherapy
    Albini, Adriana
    Bruno, Antonino
    Noonan, Douglas M.
    Mortara, Lorenzo
    [J]. FRONTIERS IN IMMUNOLOGY, 2018, 9
  • [3] Neutrophil Function: From Mechanisms to Disease
    Amulic, Borko
    Cazalet, Christel
    Hayes, Garret L.
    Metzler, Kathleen D.
    Zychlinsky, Arturo
    [J]. ANNUAL REVIEW OF IMMUNOLOGY, VOL 30, 2012, 30 : 459 - 489
  • [4] [Anonymous], HIPLOT FREE COMPREHE
  • [5] Melanoma hijacks plasmacytoid dendritic cells to promote its own progression
    Aspord, Caroline
    Leccia, Marie-Therese
    Charles, Julie
    Plumas, Joel
    [J]. ONCOIMMUNOLOGY, 2014, 3 (01)
  • [6] Multiprong control of glioblastoma multiforme invasiveness: blockade of pro-inflammatory signaling, anti-angiogenesis, and homeostasis restoration
    Bazan, Nicolas G.
    Reid, Madigan M.
    Flores, Valerie A. Cruz
    Gallo, Juan E.
    Lewis, William
    Belayev, Ludmila
    [J]. CANCER AND METASTASIS REVIEWS, 2021, 40 (03) : 643 - 647
  • [7] Gefitinib induces EGFR and α5β1 integrin co-endocytosis in glioblastoma cells
    Blandin, Anne-Florence
    Da Silva, Elisabete Cruz
    Mercier, Marie-Cecile
    Glushonkov, Oleksandr
    Didier, Pascal
    Dedieu, Stephane
    Schneider, Cristophe
    Devy, Jessica
    Etienne-Selloum, Nelly
    Dontenwill, Monique
    Choulier, Laurence
    Lehmann, Maxime
    [J]. CELLULAR AND MOLECULAR LIFE SCIENCES, 2021, 78 (06) : 2949 - 2962
  • [8] GlioVis data portal for visualization and analysis of brain tumor expression datasets
    Bowman, Robert L.
    Wang, Qianghu
    Carro, Angel
    Verhaak, Roel G. W.
    Squatrito, Massimo
    [J]. NEURO-ONCOLOGY, 2017, 19 (01) : 139 - 141
  • [9] Current and future strategies for treatment of glioma
    Bush, Nancy Ann Oberheim
    Chang, Susan M.
    Berger, Mitchel S.
    [J]. NEUROSURGICAL REVIEW, 2017, 40 (01) : 1 - 14
  • [10] A four-gene signature-derived risk score for glioblastoma: prospects for prognostic and response predictive analyses
    Cao, Mianfu
    Cai, Juan
    Yuan, Ye
    Shi, Yu
    Wu, Hong
    Liu, Qing
    Yao, Yueliang
    Chen, Lu
    Dang, Weiqi
    Zhang, Xiang
    Xiao, Jingfang
    Yang, Kaidi
    He, Zhicheng
    Yao, Xiaohong
    Cui, Yonghong
    Zhang, Xia
    Bian, Xiuwu
    [J]. CANCER BIOLOGY & MEDICINE, 2019, 16 (03) : 595 - 605