Building population models for large-scale neural recordings: Opportunities and pitfalls

被引:19
作者
Hurwitz, Cole [1 ]
Kudryashova, Nina [1 ]
Onken, Arno [1 ]
Hennig, Matthias H. [1 ]
机构
[1] Univ Edinburgh, Inst Adapt & Neural Computat Edinburgh, Edinburgh EH8 9AB, Midlothian, Scotland
基金
英国工程与自然科学研究理事会;
关键词
GAUSSIAN-PROCESS; SPIKE TRAINS; DYNAMICS; FRAMEWORK;
D O I
10.1016/j.conb.2021.07.003
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
Modern recording technologies now enable simultaneous recording from large numbers of neurons. This has driven the development of new statistical models for analyzing and interpreting neural population activity. Here, we provide a broad overview of recent developments in this area. We compare and contrast different approaches, highlight strengths and limitations, and discuss biological and mechanistic insights that these methods provide.
引用
收藏
页码:64 / 73
页数:10
相关论文
共 100 条
[1]   Pair-copula constructions of multiple dependence [J].
Aas, Kjersti ;
Czado, Claudia ;
Frigessi, Arnoldo ;
Bakken, Henrik .
INSURANCE MATHEMATICS & ECONOMICS, 2009, 44 (02) :182-198
[2]   Synchronous firing and higher-order interactions in neuron pool [J].
Amari, S ;
Nakahara, H ;
Wu, S ;
Sakai, Y .
NEURAL COMPUTATION, 2003, 15 (01) :127-142
[3]   Neural correlations, population coding and computation [J].
Averbeck, BB ;
Latham, PE ;
Pouget, A .
NATURE REVIEWS NEUROSCIENCE, 2006, 7 (05) :358-366
[4]   Failure in identification of overlapping spikes from multiple neuron activity causes artificial correlations [J].
Bar-Gad, I ;
Ritov, Y ;
Vaadia, E ;
Bergman, H .
JOURNAL OF NEUROSCIENCE METHODS, 2001, 107 (1-2) :1-13
[5]   Belief propagation and replicas for inference and learning in a kinetic Ising model with hidden spins [J].
Battistin, C. ;
Hertz, J. ;
Tyrcha, J. ;
Roudi, Y. .
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, 2015,
[6]   Modern Machine Learning as a Benchmark for Fitting Neural Responses [J].
Benjamin, Ari S. ;
Fernandes, Hugo L. ;
Tomlinson, Tucker ;
Ramkumar, Pavan ;
VerSteeg, Chris ;
Chowdhury, Raeed H. ;
Miller, Lee E. ;
Kording, Konrad P. .
FRONTIERS IN COMPUTATIONAL NEUROSCIENCE, 2018, 12
[7]  
Berkes P, 2008, ADV NEURAL INFORM PR, V21, P129
[8]  
Biljana Petreska, 2011, Advances in Neural Information Processing Systems, P756
[9]   Predicting how and when hidden neurons skew measured synaptic interactions [J].
Brinkman, Braden A. W. ;
Rieke, Fred ;
Shea-Brown, Eric ;
Buice, Michael A. .
PLOS COMPUTATIONAL BIOLOGY, 2018, 14 (10)
[10]   SpikeInterface, a unified framework for spike sorting [J].
Buccino, Alessio P. ;
Hurwitz, Cole L. ;
Garcia, Samuel ;
Magland, Jeremy ;
Siegle, Joshua H. ;
Hurwitz, Roger ;
Hennig, Matthias H. .
ELIFE, 2020, 9 :1-24