Alteration of Water Structure by Peptide Clusters Revealed by Neutron Scattering in the Small-Angle Region (below 1 Å-1)

被引:5
作者
Daidone, Isabella [1 ]
Iacobucci, Claudio [1 ]
McLain, Sylvia E. [2 ]
Smith, Jeremy C. [3 ,4 ]
机构
[1] Univ Aquila, Dept Phys & Chem Sci, I-67100 Laquila, Italy
[2] Univ Oxford, Dept Biochem, Oxford OX1 3QU, England
[3] Oak Ridge Natl Lab, Oak Ridge, TN USA
[4] Univ Tennessee, Dept Biochem & Cellular & Mol Biophys, Knoxville, TN USA
基金
英国工程与自然科学研究理事会; 美国国家科学基金会;
关键词
MOLECULAR-DYNAMICS SIMULATIONS; HYDROPHOBIC AMINO-ACID; AQUEOUS-SOLUTIONS; HYDRATION FORCES; MD SIMULATIONS; PROTEIN; SURFACES; SYSTEMS;
D O I
10.1016/j.bpj.2012.08.010
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
Solution scattering of neutrons and x-rays can provide direct information on local interactions of importance for biomolecular folding and structure. Here, neutron scattering experiments are combined with molecular-dynamics simulation to interpret the scattering signal of a series of dipeptides with varying degrees of hydrophobicity (GlyAla, GlyPro, and AlaPro) in concentrated aqueous solution (1:20 solute/water ratio) in which the peptides form large segregates (up to 50-60 amino acids). Two main results are found: 1), the shift to lower Q of the so-called water-ring peak (Q approximate to 2 angstrom(-1)) arises mainly from an overlap of water-peptide and peptide-peptide correlations in the region of 1.3 < Q < 2 angstrom(-1), rather than from a shift of the water signal induced by the presence of the clusters; and 2), in the low-Q region (Q approximate to 0.6 angstrom(-1)) a positive peak is observed originating from both the solute-solute correlations and changes in the water structure induced by the formation of the clusters. In particular, the water molecules are found to be more connected than in the bulk with hydrogen-bonding directions tangential to the exposed hydrophobic surfaces, and this effect increases with increasing peptide hydrophobicity. This work demonstrates that important information on the (hydrophobic) hydration of biomolecules can be obtained in the very-small-angle region.
引用
收藏
页码:1518 / 1524
页数:7
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