Genetic analyses of GII.17 norovirus strains in diarrheal disease outbreaks from December 2014 to March 2015 in Japan reveal a novel polymerase sequence and amino acid substitutions in the capsid region

被引:171
作者
Matsushima, Y. [1 ,2 ]
Ishikawa, M. [1 ]
Shimizu, T. [1 ]
Komane, A. [1 ]
Kasuo, S. [3 ]
Shinohara, M. [4 ]
Nagasawa, K. [5 ]
Kimura, H.
Ryo, A. [2 ]
Okabe, N. [1 ]
Haga, K. [6 ]
Doan, Y. H. [6 ]
Katayama, K. [6 ]
Shimizu, H. [1 ]
机构
[1] Kawasaki City Inst Publ Hlth, Div Virol, Kawasaki, Kanagawa, Japan
[2] Yokohama City Univ, Sch Med, Dept Microbiol, Yokohama, Kanagawa, Japan
[3] Nagano Environm Conservat Res Inst, Div Infect Dis, Nagano, Japan
[4] Saitama Inst Publ Hlth, Div Virol, Saitama 3380824, Japan
[5] Natl Inst Infect Dis, Infect Dis Surveillance Ctr, Tokyo, Japan
[6] Natl Inst Infect Dis, Dept Virol 2, Tokyo, Japan
来源
EUROSURVEILLANCE | 2015年 / 20卷 / 26期
关键词
D O I
10.2807/1560-7917.ES2015.20.26.21173
中图分类号
R51 [传染病];
学科分类号
100401 ;
摘要
A novel GII.P17-GII.17 variant norovirus emerged as a major cause of norovirus outbreaks from December 2014 to March 2015 in Japan. Named Hu/GII/JP/2014/GII.P17-GII.17, this variant has a newly identified GII.P17 type RNA-dependent RNA polymerase, while the capsid sequence displays amino acid substitutions around histo-blood group antigen (HBGA) binding sites. Several variants caused by mutations in the capsid region have previously been observed in the GII.4 genotype. Monitoring the GII.17 variant's geographical spread and evolution is important.
引用
收藏
页码:2 / 7
页数:6
相关论文
共 11 条
[1]   Norovirus Immunity and the Great Escape [J].
Debbink, Kari ;
Lindesmith, Lisa C. ;
Donaldson, Eric F. ;
Baric, Ralph S. .
PLOS PATHOGENS, 2012, 8 (10)
[2]   Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology [J].
Delport, Wayne ;
Poon, Art F. Y. ;
Frost, Simon D. W. ;
Pond, Sergei L. Kosakovsky .
BIOINFORMATICS, 2010, 26 (19) :2455-2457
[3]   Identification of Novel Ghanaian G8P[6] Human-Bovine Reassortant Rotavirus Strain by Next Generation Sequencing [J].
Dennis, Francis E. ;
Fujii, Yoshiki ;
Haga, Kei ;
Damanka, Susan ;
Lartey, Belinda ;
Agbemabiese, Chantal A. ;
Ohta, Nobuo ;
Armah, George E. ;
Katayama, Kazuhiko .
PLOS ONE, 2014, 9 (06)
[4]   Bayesian Phylogenetics with BEAUti and the BEAST 1.7 [J].
Drummond, Alexei J. ;
Suchard, Marc A. ;
Xie, Dong ;
Rambaut, Andrew .
MOLECULAR BIOLOGY AND EVOLUTION, 2012, 29 (08) :1969-1973
[5]   Whole Genomic Analysis of Human G12P[6] and G12P[8] Rotavirus Strains that Have Emerged in Myanmar [J].
Ide, Tomihiko ;
Komoto, Satoshi ;
Higo-Moriguchi, Kyoko ;
Htun, Khaing Win ;
Myint, Yi Yi ;
Myat, Theingi Win ;
Thant, Kyaw Zin ;
Hlaing Myat Thu ;
Win, Mo Mo ;
Oo, Htun Naing ;
Than Htut ;
Wakuda, Mitsutaka ;
Dennis, Francis Ekow ;
Haga, Kei ;
Fujii, Yoshiki ;
Katayama, Kazuhiko ;
Rahman, Shofiqur ;
Sa Van Nguyen ;
Umeda, Kouji ;
Oguma, Keiji ;
Tsuji, Takao ;
Taniguchi, Koki .
PLOS ONE, 2015, 10 (05)
[6]   Reliable B Cell Epitope Predictions: Impacts of Method Development and Improved Benchmarking [J].
Kringelum, Jens Vindahl ;
Lundegaard, Claus ;
Lund, Ole ;
Nielsen, Morten .
PLOS COMPUTATIONAL BIOLOGY, 2012, 8 (12)
[7]   An automated genotyping tool for enteroviruses and noroviruses [J].
Kroneman, A. ;
Vennema, H. ;
Deforche, K. ;
v. d. Avoort, H. ;
Penaranda, S. ;
Oberste, S. ;
Vinje, J. ;
Koopmans, M. .
JOURNAL OF CLINICAL VIROLOGY, 2011, 51 (02) :121-125
[8]   Proposal for a unified norovirus nomenclature and genotyping [J].
Kroneman, Annelies ;
Vega, Everardo ;
Vennema, Harry ;
Vinje, Jan ;
White, Peter A. ;
Hansman, Grant ;
Green, Kim ;
Martella, Vito ;
Katayama, Kazuhiko ;
Koopmans, Marion .
ARCHIVES OF VIROLOGY, 2013, 158 (10) :2059-2068
[9]  
Larsen Jens Erik Pontoppidan, 2006, Immunome Res, V2, P2, DOI 10.1186/1745-7580-2-2
[10]   Gastroenteritis Outbreaks Caused by Norovirus GII.17, Guangdong Province, China, 2014-2015 [J].
Lu, Jing ;
Sun, Limei ;
Fang, Lin ;
Yang, Feng ;
Mo, Yanling ;
Lao, Jiaqian ;
Zheng, Huanying ;
Tan, Xiaohua ;
Lin, Hualiang ;
Rutherford, Shannon ;
Guo, Lili ;
Ke, Changwen ;
Hui, Li .
EMERGING INFECTIOUS DISEASES, 2015, 21 (07) :1240-1242